Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0413
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.4  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   7.7  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    25   7.7  

>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 494 VYTSHFQNVSVLFLYT-KCELNKNMTRVFLKLCRFIEPYQSYRQCV 628
           VY S    V +L + T  C+L ++ + VF    RFI  Y    Q V
Sbjct: 282 VYASQIHLVDILEILTVHCDLEESFSIVFSTQPRFIARYNELVQAV 327


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -3

Query: 662 FHTNREQICTYKHTDGNFGKVQ*IYIVSKILLSYFY 555
           FH  ++ +C Y H   N G +Q   I + + L+++Y
Sbjct: 529 FHEVKDSLCFYAHNSSN-GDLQLRSIQAIVSLTFYY 563


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 379 IYVCYLLHVIVNFYLFFSK 435
           IY C LL  I++FYL  SK
Sbjct: 8   IYFCILLFCIISFYLQSSK 26


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,046
Number of Sequences: 5004
Number of extensions: 55247
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)