Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0413
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell m...    29   2.3  
U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell m...    29   2.3  
AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance prot...    29   2.3  
Z78539-4|CAB01731.1|  591|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform b protein.
          Length = 356

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 117 TSKMSVFKILLSSIIHIHVCQFIMFILC 200
           T+   VF +L S+ I + +C FIMF+ C
Sbjct: 227 TTVSGVFVLLFSATIILSLCGFIMFVCC 254


>U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform a protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 117 TSKMSVFKILLSSIIHIHVCQFIMFILC 200
           T+   VF +L S+ I + +C FIMF+ C
Sbjct: 233 TTVSGVFVLLFSATIILSLCGFIMFVCC 260


>AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance protein
           MIG-13 protein.
          Length = 362

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 117 TSKMSVFKILLSSIIHIHVCQFIMFILC 200
           T+   VF +L S+ I + +C FIMF+ C
Sbjct: 233 TTVSGVFVLLFSATIILSLCGFIMFVCC 260


>Z78539-4|CAB01731.1|  591|Caenorhabditis elegans Hypothetical
           protein C31E10.6 protein.
          Length = 591

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +3

Query: 264 LIVDKTVCVDVDVWTVQRALSGLVAAVR*KCY---FHIKYSN 380
           L VD +V VD+  W +QR     +   R KC+   F++KY +
Sbjct: 125 LNVDSSVLVDIITWVLQRISRQTMDMDRFKCFMACFNMKYED 166


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,135,094
Number of Sequences: 27780
Number of extensions: 315190
Number of successful extensions: 845
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)