Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0409
         (736 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IEQ5 Cluster: Putative uncharacterized protein MAL13P...    33   5.5  
UniRef50_Q25809 Cluster: Rps3 protein; n=2; Plasmodium|Rep: Rps3...    33   7.3  
UniRef50_Q245R5 Cluster: Putative uncharacterized protein; n=1; ...    33   9.6  
UniRef50_A0BFC7 Cluster: Chromosome undetermined scaffold_104, w...    33   9.6  
UniRef50_P38831 Cluster: Putative uncharacterized protein YHR125...    33   9.6  

>UniRef50_Q8IEQ5 Cluster: Putative uncharacterized protein MAL13P1.29;
            n=1; Plasmodium falciparum 3D7|Rep: Putative
            uncharacterized protein MAL13P1.29 - Plasmodium
            falciparum (isolate 3D7)
          Length = 1341

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
 Frame = -2

Query: 393  VTTLHPIFYYLLVRSNFYYSHHNNLKMLDVNGIYCITMNIIR*LF-----TL*YILLKYN 229
            V TL+ I ++ L+++N ++S +N L  L + GI+CI   +I  ++        Y  LK N
Sbjct: 963  VYTLNLIIFFKLLKTNIFHSQNNQL--LQMKGIFCILYILIVQIYIFFINNYFYFFLKKN 1020

Query: 228  FVEIVKDCD 202
                + D D
Sbjct: 1021 IKNNISDMD 1029


>UniRef50_Q25809 Cluster: Rps3 protein; n=2; Plasmodium|Rep: Rps3
           protein - Plasmodium falciparum
          Length = 214

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 21/114 (18%), Positives = 58/114 (50%), Gaps = 3/114 (2%)
 Frame = -2

Query: 540 HWFMKSMMRYIV*NNSCQLYKWQRLTQL*RYLTEVVNKFIV--YKYNQFRLVTTLHPIFY 367
           ++ +  ++ Y +  N  ++  ++    +   +   +NKF++  + YN++  +  L  IF 
Sbjct: 31  YYLINILLTYFIYYNMYRICNYKEDNYINININFSINKFVITFFLYNKYYNIYNLKYIFI 90

Query: 366 YLLVRSNFYYSHHNNLKMLDVNGIYCI-TMNIIR*LFTL*YILLKYNFVEIVKD 208
            L   + +YY+++N +  L +  +  I  +N+I  ++ +    +KY  ++++ D
Sbjct: 91  LLNYFNYYYYNYYNYMCFLKIKYVNNINNINVI--MYYIKKYYIKYKSLKLIFD 142


>UniRef50_Q245R5 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1689

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = -2

Query: 534 FMKSMMRYIV*NNSCQLYKWQRLTQL*RYLTEVVNKFIVYKYNQFRLVTTLHPIFYYLLV 355
           F+KS + YI  NNS   Y W+    +   + E+ N F++   +  RLV   H  F YL++
Sbjct: 516 FLKSFIMYIESNNSQNQYFWEDALVIIEEIYEISNVFLIESTS--RLVLLNH--FKYLIL 571

Query: 354 RSNFYYSHHNNLKM 313
              +  S+   L++
Sbjct: 572 NKLYKISNEQFLQV 585


>UniRef50_A0BFC7 Cluster: Chromosome undetermined scaffold_104, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_104, whole genome
            shotgun sequence - Paramecium tetraurelia
          Length = 2988

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 3/158 (1%)
 Frame = -2

Query: 594  LVLPLFFYLRL-VLRFCIDHWFMKSMMRYIV*NNSCQLYKWQRLTQL*RYLTEVVNKFIV 418
            L  P++F+ +L + + C+D   ++ +  Y+      + Y W+ +  L + L  VV   + 
Sbjct: 2692 LFFPVYFFYKLKINKTCLDKSHIRQIWGYLYNEYKQKAYFWEIVKILQKELIIVV---LA 2748

Query: 417  YKYNQFRLVTTL--HPIFYYLLVRSNFYYSHHNNLKMLDVNGIYCITMNIIR*LFTL*YI 244
            Y  +   +  +L    +  Y+ +  +    +   +  LD   I    ++II  L +  ++
Sbjct: 2749 YYEDHIPIKASLVFLSLSGYIFLAHSLQPYYTGKMNQLDREAIIICAVSII--LASQIFL 2806

Query: 243  LLKYNFVEIVKDCDL*DGGIYRNLVLKCITIILVFYFH 130
              + N VEI+  C    G I    + K    IL  YF+
Sbjct: 2807 AQESNLVEIIWPCYFIIGMINTFFIFKIFVQILFAYFN 2844


>UniRef50_P38831 Cluster: Putative uncharacterized protein YHR125W;
           n=1; Saccharomyces cerevisiae|Rep: Putative
           uncharacterized protein YHR125W - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 101

 Score = 32.7 bits (71), Expect = 9.6
 Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
 Frame = -2

Query: 336 SHHNNLKMLDVNGIYCITMNIIR*LFTL*YILLK-YNFVEIVKD-CDL*DGGIYRNLVLK 163
           ++H+N+++  +   YC+  ++   LF    + LK   +  ++ D C   D  + RN++++
Sbjct: 24  NYHSNVQLSSIRLQYCMKYSLTFSLFYNSTVTLKRQTWRTLIYDVCIWLDTAVIRNIIIR 83

Query: 162 CITIILVFYFH 130
            + + LV Y+H
Sbjct: 84  QLVVTLVVYYH 94


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 625,460,321
Number of Sequences: 1657284
Number of extensions: 11298041
Number of successful extensions: 20927
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20917
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)