Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0407
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    29   0.54 
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.8  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    27   3.8  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    26   5.0  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   6.6  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    26   6.6  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    25   8.7  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    25   8.7  

>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 155 RWRAGSSCFTNSSSRSWSRCIFWVESNKQCPRAPYNITWTQQFLF 21
           +W A  S   ++ + SW  CI +V      PRA    TW    L+
Sbjct: 120 QWSASGSIICDTLASSWPTCIAYVVDT---PRATSTSTWMSSMLY 161


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 370 ISSLFWPYAIPIFLVMTAV*CASVISINI 456
           IS LF  +   +FL++ A+ C  +I INI
Sbjct: 96  ISLLFSRFCRDVFLILAAICCTILIPINI 124


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -3

Query: 290 LVVNLTLWDMLAYHSCSSKPSYCCYTTNAAW 198
           ++ NL  W +++  SC    S C    N  W
Sbjct: 220 VIANLVSWGLISNFSCPDDESVCHRADNKGW 250


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 414 YKENRYRIRPEKRRDSWGNRDSQRGHSSSNMSRTDSAIQAALGRESY 274
           Y+ + Y   P  RRD   NR      S S  +  +++++++   ESY
Sbjct: 288 YRRDAYSRSPSPRRDREENRSPAYEGSKSYSAAPEASMESSAPTESY 334


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 97   HLDHDRDDEFVKHDEPALHLQL 162
            +L H  +DE ++H EPAL  QL
Sbjct: 1317 NLVHYNEDERIRHIEPALAFQL 1338


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 73  LFDSTQKIHLDHDRDDEFVKHDEPALHLQLLHRMLSMMLY 192
           +FDS+Q      D +D F   D   +HL  L ++  ++ +
Sbjct: 246 VFDSSQHKTQGTDNNDSFYHDDTNCIHLSRLEKIRELLTF 285


>SPCC1183.04c |pet127||mitochondrial membrane protein
          Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 66 STGTIQHHMDTAVP 25
          S G +QHH+DT +P
Sbjct: 56 SIGNLQHHLDTVLP 69


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -2

Query: 405 NRYRIRPEKRRDSWGNRDSQRGHSSSNMSRTDSAIQAALGRESYSLGHAG 256
           +R R    KRR S+G   +   HS+S     ++    AL  +S +  ++G
Sbjct: 77  SRSRSSNNKRRTSFGKNGASPTHSASPRQGNNTGANGALFSQSTNSSNSG 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,042
Number of Sequences: 5004
Number of extensions: 53127
Number of successful extensions: 158
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)