Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0407
(751 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239... 44 2e-04
03_05_1128 + 30590727-30590772,30590868-30590939,30591181-305913... 42 5e-04
11_06_0213 - 21321676-21322069,21322311-21322507,21322818-213234... 29 3.9
09_04_0249 + 16070331-16070828 29 3.9
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 29 5.2
07_01_0358 - 2631214-2632992 28 6.9
06_03_0670 - 23336385-23336504,23336769-23337092,23338315-233383... 28 6.9
01_06_0910 - 32922459-32922646,32922725-32922823,32923371-329235... 28 9.1
>03_01_0306 +
2391831-2391858,2392831-2392902,2393511-2393698,
2394143-2394203,2394306-2394368,2394396-2394474,
2394557-2394689,2394727-2394934,2398088-2398143,
2398252-2400030,2400128-2400281,2400467-2401125
Length = 1159
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = -3
Query: 695 GCRRGEINTDQANTEFSDIKRGYAK-TLEEADEKTTLANQMYDLVDRYLRRLDTELHKFK 519
G G I D A +FSD K + ADEK LA+Q YDLVD ++++LD + K +
Sbjct: 53 GLESGSITYDPAKLKFSDEAIEEQKHCVRIADEKVALASQTYDLVDAHIQQLDQFMRKLE 112
Query: 518 CELEQ 504
EL Q
Sbjct: 113 -ELRQ 116
>03_05_1128 +
30590727-30590772,30590868-30590939,30591181-30591371,
30592004-30592067,30592713-30592963,30593066-30593104,
30593193-30593213
Length = 227
Score = 41.9 bits (94), Expect = 5e-04
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Frame = -3
Query: 695 GCRRGEINTDQANTEF--SDIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKF 522
G R ++ D++ +E DI+ L EK LA Q YDL++ +++RLD +L +F
Sbjct: 59 GFDRSNMDDDESASERMKKDIEASQDNALSLCTEKVLLARQAYDLIESHIKRLDEDLGQF 118
Query: 521 KCELEQTTK 495
+L+Q K
Sbjct: 119 AEDLKQEGK 127
>11_06_0213 -
21321676-21322069,21322311-21322507,21322818-21323477,
21323522-21323578,21324741-21324848
Length = 471
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 308 PPYRLHLVVNLTLWDMLAYHSCSSKPSYCCYTTNAA 201
PP LHL++ L L A +C+ SY YT N +
Sbjct: 15 PPRHLHLLLRLRLRGRPAVSTCTYMYSYAGYTINCS 50
>09_04_0249 + 16070331-16070828
Length = 165
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 348 QRGHSSSNMSRTDSAIQAALGRESYSLGHAG 256
+R HSSS +SRT S A+ G S H G
Sbjct: 14 KRWHSSSRISRTPSGCSASAGSTSARSSHGG 44
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -2
Query: 414 YKENRYRIRPEKRRDSWGNRDSQRGHSSSNMSRTDSA 304
Y R+R+RP RD+ +R H + SR DS+
Sbjct: 300 YISPRHRMRPSHYRDNTPSRGEMHHHRDNTPSRVDSS 336
>07_01_0358 - 2631214-2632992
Length = 592
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 564 NQIIHLVGKCGLFVSLF*SFGIAPLNIRKL 653
N ++HL G CGLF S F P+ R L
Sbjct: 155 NSLVHLYGACGLFESAHKVFDEMPVRGRNL 184
>06_03_0670 -
23336385-23336504,23336769-23337092,23338315-23338387,
23338715-23338761,23338955-23339104,23339409-23339474,
23339940-23340013,23340740-23341520,23341730-23342146,
23344001-23344003
Length = 684
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 734 WTPLRKESVLFFGGCRRGEINTDQANTEFSDIKRGY 627
WT L+K+S FGG RG+ + + F ++ Y
Sbjct: 135 WTVLQKDSTKCFGGSFRGQPKSGNLGSNFGKQRQPY 170
>01_06_0910 -
32922459-32922646,32922725-32922823,32923371-32923502,
32923585-32923743,32924553-32924711,32924897-32925052,
32925846-32926044
Length = 363
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 725 LRKESVLFFGGCRRGEINTDQANTEFSDIKR 633
L+ SV FG RRG+I N +F D+ R
Sbjct: 170 LKDNSVYGFGSTRRGQIGRCTRNQKFYDVPR 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,516,654
Number of Sequences: 37544
Number of extensions: 345382
Number of successful extensions: 1054
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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