Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0407
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14)       46   3e-05
SB_53474| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.005
SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)                    37   0.020
SB_21648| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_16472| Best HMM Match : DUF922 (HMM E-Value=2.5)                    32   0.43 
SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)                   31   1.3  
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)                  29   4.0  
SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)                   29   5.3  
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     29   5.3  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    29   5.3  
SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)             28   7.0  
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  
SB_42145| Best HMM Match : Candida_ALS (HMM E-Value=0.36)              28   9.3  

>SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14)
          Length = 628

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/54 (33%), Positives = 35/54 (64%)
 Frame = -3

Query: 665 QANTEFSDIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEQ 504
           Q       I+  ++K+ E  D+K  LA Q Y++VD+++R+LD +L +F+ +L++
Sbjct: 16  QRTDHLKKIENAFSKSKEYVDDKVQLAMQTYEMVDKHIRKLDHDLARFEADLKE 69


>SB_53474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = -3

Query: 704 FFGGCRRGEINTDQANTEFSDIKRGYAKTLEEADEKTTLANQMYDL 567
           FF  CR+ +   +    ++  I+  Y K +E+ADEK ++A Q+YDL
Sbjct: 37  FFMNCRKAK--PEWKEQQYKQIRDEYQKAVEDADEKVSIATQIYDL 80


>SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)
          Length = 1103

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = -3

Query: 749 LSKITWTPLRKESVLFFGGCRRGEINTDQANTEFSDIKRGYAKTLEEADEKTTLANQMYD 570
           L  IT+ P +K+ V+ F    + E++T+Q+  EFS+   G  +TL E   K  LA+   +
Sbjct: 355 LEFITFEPFKKDVVVNFAAQFKKELDTEQSELEFSEAVDGVGETLLEEVIKELLADAADE 414

Query: 569 LVD 561
            V+
Sbjct: 415 CVN 417


>SB_21648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 15/25 (60%), Positives = 18/25 (72%)
 Frame = -3

Query: 566 VDRYLRRLDTELHKFKCELEQTTKG 492
           VD++LR+LD EL KFK ELE    G
Sbjct: 1   VDKHLRKLDQELSKFKMELEADNAG 25



 Score = 31.9 bits (69), Expect = 0.57
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = -2

Query: 507 ADNKGITELLEKRSLELD 454
           ADN GITE+LE+RSL LD
Sbjct: 21  ADNAGITEVLEQRSLRLD 38


>SB_16472| Best HMM Match : DUF922 (HMM E-Value=2.5)
          Length = 399

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 23/80 (28%), Positives = 39/80 (48%)
 Frame = -3

Query: 689 RRGEINTDQANTEFSDIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCEL 510
           R+ E+N ++ +  F D+K  + +++ E    T L N+    +D+ L+  D E  + K   
Sbjct: 166 RKSELNHEERHALFKDVKARHIESVWET--ITLLGNKTRSSLDQILQSTDKEREERKANH 223

Query: 509 EQTTKG*QNCLRRGHLNWML 450
             T KG  N L R   N +L
Sbjct: 224 SSTGKG--NKLGRALRNGLL 241


>SB_47583| Best HMM Match : SAP (HMM E-Value=8.9e-08)
          Length = 407

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = -3

Query: 692 CRRGEINTDQANTEFSDIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCE 513
           CR    NT + + E  D+K+G    +E  +   TL + +  ++D       T   + +  
Sbjct: 322 CRNNSTNTGETSEEICDVKKGQEPNMESREGAGTLEDVV--VIDDSTNDTATRQSQTQLH 379

Query: 512 LEQTTKG*QNCLR 474
           L    +  Q CLR
Sbjct: 380 LVSGIQAFQQCLR 392


>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
          Length = 766

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 363 GNRDSQRGHSSSNMSRTDS-AIQAALGRESYS 271
           GNRD+Q+G+S+  MS T + A  AAL     S
Sbjct: 180 GNRDTQKGNSNGTMSSTSTQAFPAALNETPLS 211


>SB_43755| Best HMM Match : rve (HMM E-Value=5.6e-11)
          Length = 461

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 680 EINTDQANTEFSDIKRGYAKTLEEADEKTTLANQMYD-LVDRYLRRLDTELHKFKCELEQ 504
           E+++DQ     S +     K L     +TT A+   D +VDRY R L   L KF    +Q
Sbjct: 226 ELHSDQGRNFESQVFLEVCKLLGINKTRTTPAHPESDNMVDRYNRTLKDYLAKFTAANQQ 285

Query: 503 T 501
           T
Sbjct: 286 T 286


>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 390 RPEKRRDSWGNRDS-QRGHSSSNMSRTDSAIQAALGRESYSLG 265
           R + RRD++  R   Q GHSSS+ SR+  +  +    E   +G
Sbjct: 39  RDDTRRDNYARRRPVQDGHSSSSTSRSSRSRSSGANSEEVHIG 81


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -2

Query: 390 RPEKR---RDSWGNRDSQRGHSSSNMSRTDSAIQAALGR 283
           +PE R   R SWG  + QRG+ +SN  + +  +  A+G+
Sbjct: 484 KPENRKAIRGSWGLPNLQRGYIASNQDKLEWKVFFAMGK 522


>SB_13245| Best HMM Match : Ion_trans (HMM E-Value=3.3e-25)
          Length = 816

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 647 SDIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEQTTK 495
           SDI   + +  +EA E+T    + Y  + R ++RL+ ++      L Q  K
Sbjct: 744 SDINENFVECSQEAHERTVEMGEKYREMSRDIKRLENKVDTLIALLSQQQK 794


>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 411 KENRYRIRPEKRRDSWGNRDSQRGHSSSNMSR 316
           +E +YR R ++RR+ +G  DS   ++  N  R
Sbjct: 819 REAKYRDRAKERREKYGQPDSSSNYAPPNRKR 850


>SB_8914| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 168 MKQLQVESWLIMLYKLIITIMVKVYLLGRVK*TVSTGTIQHHMDTAV-PLPLPS 10
           +K +Q+++WL ++ +LI  I     L+GR+   + T   +HH    + PL + S
Sbjct: 441 IKTIQIDTWLQVIPQLIARIDTPRQLVGRLIHQLLTDIGKHHPQALIYPLTVAS 494


>SB_42145| Best HMM Match : Candida_ALS (HMM E-Value=0.36)
          Length = 542

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 566 PNHTFGWQVWSFRQPLLKFWHSPA*YPKTQYWLDRYLFHHDDI 694
           P+H  G + W      LK + S   YPK+ YW    L++  D+
Sbjct: 13  PSHLQGSRRWCLTGNNLKLYTSSLGYPKSLYWA-HVLYYISDL 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,390,167
Number of Sequences: 59808
Number of extensions: 393736
Number of successful extensions: 1026
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)