Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0407
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical ...    31   1.2  
AC024781-1|AAN39662.2|  367|Caenorhabditis elegans Hypothetical ...    29   3.5  
U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z81500-8|CAM84816.1|  284|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated p...    28   6.2  
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep...    28   6.2  
AF040647-11|AAB94992.4|  270|Caenorhabditis elegans Hypothetical...    28   6.2  
Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z70210-3|CAA94150.1|  267|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical
           protein Y51H1A.4 protein.
          Length = 490

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 608 ADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEQTTKG*QNCLRRGHLNWMLILIT 438
           A  K  +A +M +L+ +Y   L+ E   F+CE+E    G    + + +   +  L+T
Sbjct: 77  AQRKYLIAEKMQELLKKYKVHLEKEKTTFQCEMEADNSGVTEMIEKRYTQHVESLLT 133


>AC024781-1|AAN39662.2|  367|Caenorhabditis elegans Hypothetical
           protein Y43H11AL.1 protein.
          Length = 367

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/75 (26%), Positives = 36/75 (48%)
 Frame = -3

Query: 716 ESVLFFGGCRRGEINTDQANTEFSDIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDT 537
           E ++F    ++ E    +A  + +D+K    +  E A++KT LA + +  V     +L+ 
Sbjct: 47  EKIMF--DTQKSEKERVEAGRKLADLK---CRIRELAEKKTLLAERNHRTVQAVYTKLNE 101

Query: 536 ELHKFKCELEQTTKG 492
             +  KCELE    G
Sbjct: 102 LAYHCKCELETDNPG 116


>U23147-1|AAC46692.2|  674|Caenorhabditis elegans Hypothetical
           protein C18H9.8 protein.
          Length = 674

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/55 (32%), Positives = 32/55 (58%)
 Frame = -3

Query: 659 NTEFSDIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEQTTK 495
           N + SDI+   +K  E+ADE  +LA ++++  +R  R  + EL   + E+E+  K
Sbjct: 253 NGDMSDIELEASKMKEQADEMRSLAEEVFN--ER--RAKEEELQGLEIEVEEQKK 303


>Z81500-8|CAM84816.1|  284|Caenorhabditis elegans Hypothetical
           protein F11D11.14 protein.
          Length = 284

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
 Frame = -3

Query: 158 CRWRAGSSCFTNSSSRSWSRCIFWVESNKQCPRAPYN-ITWTQQFLFLYQA 9
           C+W   +    N  S  W+    W++  + C   P N I WT  F   + A
Sbjct: 181 CQWIREA---VNGMSPPWNNYGVWIDGRRNCTDEPCNVIYWTDGFTTTFDA 228


>U64854-6|AAB18318.2| 5079|Caenorhabditis elegans Uncoordinated
            protein 68 protein.
          Length = 5079

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 555  IPINQIIHLVGKCGLFVSLF*SFGIAPLNIRKLSIGLIGIYFTTTTSTKKEYGLFSQGCP 734
            +P+  I     +CG +      +G+A    ++LS+ L    F T  S   +  LF +  P
Sbjct: 2740 VPLRLITLHYERCGKYYGSGNHYGVASEQEKRLSMLLFDAIFDTLGSRPYDPELFGKALP 2799

Query: 735  C 737
            C
Sbjct: 2800 C 2800


>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
            protein.
          Length = 5071

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +3

Query: 555  IPINQIIHLVGKCGLFVSLF*SFGIAPLNIRKLSIGLIGIYFTTTTSTKKEYGLFSQGCP 734
            +P+  I     +CG +      +G+A    ++LS+ L    F T  S   +  LF +  P
Sbjct: 2745 VPLRLITLHYERCGKYYGSGNHYGVASEQEKRLSMLLFDAIFDTLGSRPYDPELFGKALP 2804

Query: 735  C 737
            C
Sbjct: 2805 C 2805


>AF040647-11|AAB94992.4|  270|Caenorhabditis elegans Hypothetical
           protein F54D12.1 protein.
          Length = 270

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -3

Query: 122 SSSRSWSRCIFWVESNKQCPRAPYNI 45
           SS  SW  C+F    NK C  A  N+
Sbjct: 182 SSKESWRECLFTCYLNKNCMAASVNV 207


>Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical
           protein R06C7.8 protein.
          Length = 987

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -3

Query: 680 EINTDQANTEFSDIKRGYAKTLEEADEKTTLANQMYDLVDRY 555
           E   DQ   EF D+ +     L E  E T + +   DLVD Y
Sbjct: 107 ECGKDQMLEEFKDVLKLARDRLSERIEMTAIESGFRDLVDEY 148


>Z70210-3|CAA94150.1|  267|Caenorhabditis elegans Hypothetical
           protein K08H2.3 protein.
          Length = 267

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
 Frame = -1

Query: 607 LTKRPH--LPTKCMIWLIGIFD 548
           L KRPH  +PT+ ++W  GI D
Sbjct: 41  LDKRPHGEIPTRLLLWRFGIID 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,719,211
Number of Sequences: 27780
Number of extensions: 296946
Number of successful extensions: 836
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)