Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0407
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   4.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.1  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   7.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.3  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -3

Query: 641 IKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEQ 504
           I+RG  K++E A+  + L   +    D Y+R     L   K   EQ
Sbjct: 517 IERGTTKSMEAANIMSKLPKTVRTPTDSYIRSFFELLQNPKVSNEQ 562


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 338 CPRWESRFPQLSRRFSGLMR 397
           C  W S+FP  S+R   + R
Sbjct: 401 CRSWLSKFPTRSKRIDVISR 420


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 338 CPRWESRFPQLSRRFSGLMR 397
           C  W S+FP  S+R   + R
Sbjct: 401 CRSWLSKFPTRSKRIDVISR 420


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -3

Query: 629 YAKTLEEADEKTTLANQMYDLVDRYLRR 546
           + K+LEE + K  +  +      R+LRR
Sbjct: 96  FIKSLEERERKHAVHKEQLSREQRFLRR 123


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -3

Query: 575 YDLVDRYLRRLDTELHKFKCELEQTTKG*QNCLRR 471
           +D +D +LR L  +L +       TT    +C R+
Sbjct: 70  FDTLDTFLRELQADLAEASQPTSTTTSVTPSCRRQ 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,727
Number of Sequences: 438
Number of extensions: 3707
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)