Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0407
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24010.1 68416.m03016 PHD finger family protein contains Pfam...    41   0.001
At1g54390.4 68414.m06205 PHD finger protein-related contains low...    41   0.001
At1g54390.3 68414.m06204 PHD finger protein-related contains low...    41   0.001
At1g54390.2 68414.m06202 PHD finger protein-related contains low...    41   0.001
At1g54390.1 68414.m06203 PHD finger protein-related contains low...    41   0.001
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ...    29   2.5  
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    29   3.3  
At3g12940.1 68416.m01612 expressed protein                             29   4.4  
At2g42080.1 68415.m05203 DNAJ heat shock N-terminal domain-conta...    29   4.4  
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ...    28   5.8  
At5g04850.1 68418.m00508 SNF7 family protein contains Pfam domai...    28   5.8  
At1g67230.1 68414.m07652 expressed protein                             28   7.6  

>At3g24010.1 68416.m03016 PHD finger family protein contains Pfam
           profile: PF00628 PHD-finger
          Length = 234

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = -3

Query: 689 RRGEINTDQANTEFSDIKRGYAK-TLEEADEKTTLANQMYDLVDRYLRRLDTELHK 525
           R G I  + + T+FS+      K ++  ADEK TLA Q YDLVD ++++LD  + K
Sbjct: 54  RAGNITPNTSLTKFSEEALDEQKHSVRIADEKVTLAMQAYDLVDMHVQQLDQYMKK 109


>At1g54390.4 68414.m06205 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 262

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -3

Query: 644 DIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEQTTK 495
           +I+      L    EK  LA Q YDL+D +++RLD +L+ F  +L+Q  K
Sbjct: 85  EIESSQENALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGK 134


>At1g54390.3 68414.m06204 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 262

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -3

Query: 644 DIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEQTTK 495
           +I+      L    EK  LA Q YDL+D +++RLD +L+ F  +L+Q  K
Sbjct: 85  EIESSQENALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGK 134


>At1g54390.2 68414.m06202 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 328

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -3

Query: 644 DIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEQTTK 495
           +I+      L    EK  LA Q YDL+D +++RLD +L+ F  +L+Q  K
Sbjct: 85  EIESSQENALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGK 134


>At1g54390.1 68414.m06203 PHD finger protein-related contains low
           similarity to PHD-finger domain proteins
          Length = 306

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -3

Query: 644 DIKRGYAKTLEEADEKTTLANQMYDLVDRYLRRLDTELHKFKCELEQTTK 495
           +I+      L    EK  LA Q YDL+D +++RLD +L+ F  +L+Q  K
Sbjct: 85  EIESSQENALSLCTEKVLLARQAYDLIDSHVKRLDEDLNNFAEDLKQEGK 134


>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
           protein 
          Length = 710

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 408 ENRYRIRPEKRRDS-WGNRDSQRGHSSSNMSRTDS 307
           ++R R R E   D  W    S RGH+ S +SR D+
Sbjct: 657 DHRTRHRDEPEHDEEWNRGRSSRGHNKSRLSREDN 691


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
            similarity to flagelliform silk protein [Nephila
            clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +3

Query: 618  SFGIAPLNIRKLSIGLIGI 674
            S GI+PLNIR+LSI   GI
Sbjct: 953  SLGISPLNIRRLSISPFGI 971


>At3g12940.1 68416.m01612 expressed protein 
          Length = 474

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +1

Query: 31  CCVHVMLYGARGHCLFDSTQKI-HLDHDRDDE-----FVKHDEPALHLQLLH 168
           C      +GA+ H L +  Q I + DHD   +     FVK D+  LH++ +H
Sbjct: 181 CYARPSFHGAQHHSLTEDEQLILYSDHDHQLDKSLISFVKSDKAGLHIRDMH 232


>At2g42080.1 68415.m05203 DNAJ heat shock N-terminal
           domain-containing protein low similarity to SP|Q9QYI7
           DnaJ homolog subfamily B member 8 (mDJ6) {Mus musculus};
           contains Pfam profile PF00226: DnaJ domain
          Length = 263

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 155 RWRAGSSCFTNSSSRSW 105
           RWR  SS F+N+S+RSW
Sbjct: 154 RWRHHSSRFSNNSNRSW 170


>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
           protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
          Length = 947

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -2

Query: 396 RIRPEKRRDSWGNRDSQRGHS-SSNMSRTDSAIQAALGRE 280
           R+ PEKR     +RDS R  + S + +R+ S  Q +L RE
Sbjct: 852 RVLPEKREKREDSRDSSRKRNRSESQNRSQSPPQKSLTRE 891


>At5g04850.1 68418.m00508 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 235

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 584 NQMYDLVDRYLRRLDTELHKFKCELEQTTKG 492
           N+  D V+  ++RLD EL K+K ++++T  G
Sbjct: 25  NKRGDSVEEKVKRLDAELCKYKDQIKRTRPG 55


>At1g67230.1 68414.m07652 expressed protein
          Length = 1132

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = -3

Query: 626 AKTLEEADEKTTLANQM--YDLVDRYLRRLDTELHKFKCELEQTTKG*QNCLR 474
           A+ L+   EK     +M    LVD +  +LD+   +F+ E+EQ  K   + L+
Sbjct: 320 ARELQALQEKLEAREKMAVQQLVDEHQAKLDSTQREFELEMEQKRKSIDDSLK 372


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,815,949
Number of Sequences: 28952
Number of extensions: 275272
Number of successful extensions: 802
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)