Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0406
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces p...    29   0.29 
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    27   2.1  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    26   2.7  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   6.3  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   6.3  
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    25   8.3  
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual     25   8.3  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   8.3  

>SPCC1020.05 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 509

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 430 WLGQS-ADTKYCSCSVAVVRRPLQELCSTADI 338
           WL    AD KY    +AV+  PL+E C T D+
Sbjct: 371 WLSSKVADFKYEPIQMAVLHIPLKEFCETEDL 402


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = +1

Query: 88  RPCRLPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPV 255
           R   L +T  PFS++   RF I HA   +VR    A  W +  +  F    +P+ +
Sbjct: 434 RSILLVNTNEPFSMKT--RFKIQHATEWNVRVVGVAWLWNIIQSGKFIDQVSPWAI 487


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -1

Query: 143 RHASRREKGGQV---SGKRQGRNRRAHEGASR 57
           +   RRE+GG+V   SG+ + R+   HE  SR
Sbjct: 95  KRGGRRERGGRVHGDSGRLRSRSPSPHEARSR 126


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 195 SERPTPN*DTYSVSYEKAPRFPK 127
           S   +P  D+YS  YEK   FPK
Sbjct: 131 SRANSPQSDSYSSPYEKGKLFPK 153


>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 290 LSPLAAATGNRISRARYVRGATEFLKWSPNYGYT 391
           L P++    N I    +V+ + EF+  SPN  YT
Sbjct: 581 LLPISMLISNGIQVLTFVQNSNEFVITSPNTYYT 614


>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +3

Query: 267 SPTR*DTTYRHWQQPLVTGLAERGMSAVLQSS*SGRLTTATLQEQYLVSAL-CPSQLPPE 443
           +PT    T ++ QQP+ T L+        QS  + +   AT   Q  VS +   + LPP 
Sbjct: 466 NPTSASVTSQNGQQPINTKLSANAAKTNYQSYLTNKARNATQPTQPPVSQVDYSNNLPPN 525

Query: 444 KES 452
            ++
Sbjct: 526 LDT 528


>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 325

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +1

Query: 112 CPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYP 252
           C  F +R    +++  A  +     + + +W VCT+   + T   YP
Sbjct: 138 CFDFRVRHPHNYMVKFAKSLKFSSSTASIAWNVCTDAYKTYTMLKYP 184


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 305 AATGNRISRARYVRGATEFLKWSPNYG 385
           AA GN I+ A  +     FL WSP  G
Sbjct: 353 AAAGNSITFAEAIPQDIGFLPWSPTGG 379


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,040
Number of Sequences: 5004
Number of extensions: 46526
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)