Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0406
(494 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0218 + 18219956-18220555 33 0.13
09_06_0037 + 20389976-20391016,20391103-20391723 29 2.1
08_01_0156 - 1233431-1233925 29 2.7
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411... 28 3.6
03_06_0149 - 31987183-31987630,31987813-31987874 28 3.6
03_04_0061 - 16949038-16950006 28 3.6
05_04_0142 - 18372751-18373338 28 4.7
04_04_1105 - 30942735-30942791,30943116-30943466,30943670-309437... 28 4.7
04_01_0009 - 178579-178638,179151-179246,179504-179565,180181-18... 28 4.7
10_08_0965 + 21915842-21916906 27 6.3
01_06_0509 - 29921224-29924589 27 6.3
08_01_0891 + 8775537-8776127,8776403-8776513 27 8.3
>06_03_0218 + 18219956-18220555
Length = 199
Score = 33.1 bits (72), Expect = 0.13
Identities = 22/63 (34%), Positives = 27/63 (42%)
Frame = -1
Query: 227 NGGFVHTAQLGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRGKR 48
NGG ++ A +T P R R R E G + KR+GR R G RGKR
Sbjct: 81 NGGLTEGEEVAARPREKTARPDG--ARARRERRLEAAG--AEKREGRRRGGSSGGLRGKR 136
Query: 47 LVS 39
S
Sbjct: 137 RAS 139
>09_06_0037 + 20389976-20391016,20391103-20391723
Length = 553
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 312 LVTGLAERGMSAVLQSS*SGRLTTATLQEQYLVSALCP 425
L+TGLA R ++A +++ +GRL +L E +V A P
Sbjct: 92 LMTGLAHRKLAAAAEAAGAGRLMALSLGETRVVVAAHP 129
>08_01_0156 - 1233431-1233925
Length = 164
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = -1
Query: 200 LGANDLHRTEIPTA*AMRKRHASRREK--GGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 27
LG D TE+ A A A+R E+ GG G R G RA + +G +
Sbjct: 89 LGDADATATEVDAAAAAEAEAAARGERGDGGGDGGGRAGGRGRARDEREKGAAADRVLGV 148
Query: 26 RVSPPLT 6
R SP ++
Sbjct: 149 RASPTVS 155
>06_03_0867 +
25534760-25539620,25540662-25540857,25540957-25541104,
25541673-25541751,25542151-25542238,25542330-25542600,
25542676-25542718,25542801-25542904,25543374-25543790
Length = 2068
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +2
Query: 179 GVGRSLQAGLCARTPRSARPLRLIRYYRLESNPVRHDLS 295
G AG R P+ P R+ ++R+E NP ++ S
Sbjct: 274 GSPHGTSAGYARRAPQKVAPSRVSVWHRIEENPAMYEPS 312
>03_06_0149 - 31987183-31987630,31987813-31987874
Length = 169
Score = 28.3 bits (60), Expect = 3.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 155 AMRKRHASRREKGGQVSGKRQGRNRRAHEGASRG 54
A+ + H R + + +R+GR R AHEG G
Sbjct: 76 AVARGHGLERLQEAGIEAERRGRRRNAHEGIKIG 109
>03_04_0061 - 16949038-16950006
Length = 322
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 29 RTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPFGKRGA 145
RT+K PG+ ++PRA+ + P Y VR + +R A
Sbjct: 255 RTMKGPGLGGARVPRAVFRASPRRYYAAVRTARKARRSA 293
>05_04_0142 - 18372751-18373338
Length = 195
Score = 27.9 bits (59), Expect = 4.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -1
Query: 143 RHASRREKGGQVSGKRQGRNRRAHEGASRGKRLVSL*SC 27
R E+GG G++QGR R+A A R +RL + +C
Sbjct: 59 RRVEEEEQGGGGGGRKQGRRRKAVARAIR-ERLPAAVAC 96
>04_04_1105 -
30942735-30942791,30943116-30943466,30943670-30943762,
30943869-30944072,30944155-30944399,30945019-30945877,
30946070-30946936,30947113-30947562
Length = 1041
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Frame = +1
Query: 97 RLPDTCPPFSLREAWRFLIA-----HAVGISVRCRS 189
RL D C P L+E WRFL+A A S RC++
Sbjct: 849 RLAD-CDPRVLKEQWRFLVAFWNTEEAQAASARCKA 883
>04_01_0009 -
178579-178638,179151-179246,179504-179565,180181-180245,
181271-181363,181489-181592,182070-182153,182223-182303,
182829-182880,183048-183119,183411-183486,183568-183680,
184056-184203,184295-184372,184511-184640,184733-184923,
187039-187099,187201-187371
Length = 578
Score = 27.9 bits (59), Expect = 4.7
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 303 QQPLVTGLAERGMSAVLQSS*SGRLTTATLQEQYLVSALCPSQLPPEK 446
Q P +TG + R +++S GRL T+ L+ Q ++ + + PE+
Sbjct: 20 QAPHLTGFSLRAFVWLMESPLFGRLLTSVLKSQNNITRMLQDTVIPER 67
>10_08_0965 + 21915842-21916906
Length = 354
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 6 SQRWRNPTGL*RYQAFPPGSSLVRS-PVPTLPLTGYL 113
S R NP + PP + VR+ P+PTLP + YL
Sbjct: 193 SSRRSNPNSAAAVASAPPEGAAVRAYPLPTLPNSEYL 229
>01_06_0509 - 29921224-29924589
Length = 1121
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = -2
Query: 490 ATSGGLSAGSRATDSFSGGNWLGQSADTKYCSCSVAVVRRPLQELCSTADIPRSANPVTS 311
+TS + SR+ + +W + T S ++A +PLQ L + AD+ + N
Sbjct: 751 STSRDIYIDSRSHSATMNSDWRQNLSGTNLLSINLAAFEKPLQNL-TLADLVEATNGFHI 809
Query: 310 GC 305
C
Sbjct: 810 AC 811
>08_01_0891 + 8775537-8776127,8776403-8776513
Length = 233
Score = 27.1 bits (57), Expect = 8.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 26 DRTIKIPGVSPWKLPRALSCSDPAAYRIPVRLSPF 130
D G +PW+L R+LSC A + +P+
Sbjct: 164 DAAAAAAGWAPWRLIRSLSCKGIEAVAVAAAAAPY 198
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,491,022
Number of Sequences: 37544
Number of extensions: 398453
Number of successful extensions: 1415
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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