Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0406
         (494 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-778|AAX52730.2|  660|Drosophila melanogaster CG33545-PA...    30   2.0  
AE014297-4641|AAN14249.1|  659|Drosophila melanogaster CG31019-P...    29   2.6  
BT030241-1|ABN49380.1|   74|Drosophila melanogaster IP18279p pro...    28   6.0  

>AE014296-778|AAX52730.2|  660|Drosophila melanogaster CG33545-PA
           protein.
          Length = 660

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +3

Query: 54  PPGSSLVRSPVPTLPLTGYLSAFLPSGSVALSHSSRCRYLSSV 182
           P GSS + SPVP  PL    SA +P+ +V L+    C    SV
Sbjct: 263 PSGSSFMPSPVPPAPLPA--SASVPAPTVPLATQISCPSAPSV 303


>AE014297-4641|AAN14249.1|  659|Drosophila melanogaster CG31019-PA
           protein.
          Length = 659

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 113 QVSGKRQGRNRRAHEGASRGK 51
           +V  KR+GRNR AH   SR K
Sbjct: 491 EVRSKRRGRNRHAHHSRSRSK 511


>BT030241-1|ABN49380.1|   74|Drosophila melanogaster IP18279p
           protein.
          Length = 74

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 48  AFPPGSSLVRSPVPTLPLTGYLSAFLPSGS 137
           A PP  +  RS +P  P++G +++  P+GS
Sbjct: 30  AVPPAPAKQRSTLPEFPISGSVTSTAPAGS 59


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,925,408
Number of Sequences: 53049
Number of extensions: 606122
Number of successful extensions: 1887
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1887
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1742533632
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)