Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0406
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.26 
AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical ...    28   3.2  
Z68880-9|CAA93099.1|  255|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z68879-12|CAA93091.1|  255|Caenorhabditis elegans Hypothetical p...    27   5.7  
AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical...    27   7.5  
Z81094-4|CAB03152.1|  528|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z68751-6|CAA92976.1|  202|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 34  YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 156
           Y+  R+F +E    ALL +   +P+TC   +  E W FL A
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111


>AF024502-6|AAB70378.4|  402|Caenorhabditis elegans Hypothetical
           protein M151.1 protein.
          Length = 402

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = -3

Query: 210 HSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTGIR*AAGSEQESARGSFQGETPGIF 37
           H  AW+ R  P    ++ +  K  ++ K E + G     G+E+       +G+T   F
Sbjct: 96  HDKAWNNRSLPQKSRWNQASVKLAQYQKAEEKMGFIKVFGTEEFQNYSKRRGQTRNSF 153


>Z68880-9|CAA93099.1|  255|Caenorhabditis elegans Hypothetical
           protein K08F4.9 protein.
          Length = 255

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 305 LPVAISRVLPGWTQDDSTG*GAAVGLN 225
           +PV I+ + PGW Q D  G  A + ++
Sbjct: 198 IPVLITNIHPGWVQTDMGGSNAEISVD 224


>Z68879-12|CAA93091.1|  255|Caenorhabditis elegans Hypothetical
           protein K08F4.9 protein.
          Length = 255

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 305 LPVAISRVLPGWTQDDSTG*GAAVGLN 225
           +PV I+ + PGW Q D  G  A + ++
Sbjct: 198 IPVLITNIHPGWVQTDMGGSNAEISVD 224


>AL032631-11|CAB63341.1|  975|Caenorhabditis elegans Hypothetical
           protein Y106G6H.12 protein.
          Length = 975

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 403 YCSCSVAVVRRP 368
           YCSC V +VRRP
Sbjct: 525 YCSCEVTIVRRP 536


>Z81094-4|CAB03152.1|  528|Caenorhabditis elegans Hypothetical
           protein F58G11.6 protein.
          Length = 528

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +2

Query: 227 SARPLRLIRYYRLESNPVRHDLSPLAAATGNRISRARYVRGATEFLKWSPNYG 385
           S R L  + +Y L  N +   L+P    +G   S+ RY+RG T+    +P  G
Sbjct: 251 SKRDLPSLFHY-LTHNLLPTTLAPELEHSGRNASKGRYLRGPTDLTTDAPLLG 302


>Z68751-6|CAA92976.1|  202|Caenorhabditis elegans Hypothetical
           protein T05E11.8 protein.
          Length = 202

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 143 RHASRRE-KGGQVSGKRQGRNRRA-HEGASRGKR 48
           RH  R+  KGG+  GK+ G  +R  H G   GK+
Sbjct: 163 RHGGRKGGKGGKHFGKKNGDKKRGPHGGDEEGKK 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,621,141
Number of Sequences: 27780
Number of extensions: 279994
Number of successful extensions: 757
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)