Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0406
         (494 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.0  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   1.8  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   3.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   7.2  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   7.2  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    21   7.2  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   7.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 436 GNWLGQSADTKYCSCSVAVVRRPLQELCSTA 344
           G+  G S+ TKY  C +     PLQ   + A
Sbjct: 785 GSSAGTSSITKYTGCELTSESMPLQSALTAA 815


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 202 WAVCTNPPFSPTAAP 246
           W V  +PP+SP  AP
Sbjct: 264 WDVLPHPPYSPDLAP 278


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 436 GNWLGQSADTKYCSCSVAVVRRPLQELCSTA 344
           G+  G S+ TKY  C +     PLQ   + A
Sbjct: 875 GSSAGTSSITKYTGCELTSESMPLQSALTAA 905


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 40  DTRRFPLEAPSCALLFRPCR 99
           + R FP++  SC L+   C+
Sbjct: 165 ELRNFPMDRQSCPLILGSCK 184


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -1

Query: 146 KRHASRREKGGQVSGKRQGRNRRAH 72
           KR  +++ +G + +     +NRRAH
Sbjct: 39  KRPKTKKSQGSRTTHNELEKNRRAH 63


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 481 GGLSAGSRATDSFSGGNWLGQSADTKYC 398
           G + + + A D FSG    G   D+K C
Sbjct: 518 GLIKSENEAADFFSGSCAPGAPLDSKLC 545


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 481 GGLSAGSRATDSFSGGNWLGQSADTKYC 398
           G + + + A D FSG    G   D+K C
Sbjct: 518 GLIKSENEAADFFSGSCAPGAPLDSKLC 545


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 2   LKSEVAKPDRTIKIPGVSP 58
           L+SE+A+ +  IK+  +SP
Sbjct: 175 LRSELAQCESNIKVISISP 193


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 481 GGLSAGSRATDSFSGGNWLGQSADTKYC 398
           G + + + A D FSG    G   D+K C
Sbjct: 518 GLIKSENEAADFFSGSCAPGAPLDSKLC 545


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 383 GYTTRTVFGICALPKPVT 436
           G  TRTV G+ A   P+T
Sbjct: 625 GMRTRTVCGVAAGDPPLT 642


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,892
Number of Sequences: 438
Number of extensions: 3866
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13667319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)