Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0406
         (494 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58040.1 68418.m07263 fip1 motif-containing protein contains ...    32   0.24 
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi...    31   0.43 
At3g50230.1 68416.m05493 leucine-rich repeat transmembrane prote...    29   1.3  
At4g37740.1 68417.m05343 expressed protein identical to transcri...    27   6.9  
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont...    27   6.9  
At4g04990.1 68417.m00728 expressed protein contains Pfam domain ...    27   9.2  

>At5g58040.1 68418.m07263 fip1 motif-containing protein contains Pfam
            profile PF05182: Fip1 motif
          Length = 1192

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -1

Query: 227  NGGFVHTAQLGANDLH--RTEIPTA*AMRKRHASRREKGGQVSGKRQGRNR 81
            NG  V T   G ND    R+EIP      KRH      G ++   ++GR +
Sbjct: 1003 NGSSVVTGSKGTNDARNCRSEIPHQPNTAKRHKENASSGDEIHDSKRGRTK 1053


>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
           PF00076 RNA recognition motif
          Length = 636

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = -1

Query: 230 LNGGFVHTAQLGANDLHR----TEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGA 63
           + GG +H  +    D          P   A R RH+ R  +GG+ S  R  R R +  GA
Sbjct: 546 IGGGNIHVEESRPRDSDEGRSSNRAPARGAPRGRHSDRAPRGGRFS-DRAPRGRHSDRGA 604

Query: 62  SRGK 51
            RG+
Sbjct: 605 PRGR 608


>At3g50230.1 68416.m05493 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase (RKL1),
           Arabidopsis thaliana, EMBL:AF084034
          Length = 660

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 69  LVRSPVPTLPLTGYLSAFLPSGSVAL 146
           L+R    +LP T Y  +FLPS +VAL
Sbjct: 15  LLRISTASLPATNYFDSFLPSDAVAL 40


>At4g37740.1 68417.m05343 expressed protein identical to
           transcription activator GRL2 [Arabidopsis thaliana]
           GI:21539882 (unpublished); supporting cDNA
           gi|21539881|gb|AY102635.1|
          Length = 535

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 274 VGLKTIVPDKAQRSG*TGGSCTQPSLE--RTT 185
           +GLK ++  K  RSG  G  C Q SL+  RTT
Sbjct: 19  LGLKELIGTKQDRSGFIGEDCLQRSLKLARTT 50


>At1g74190.1 68414.m08592 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 965

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 352 STADIPRSANPVTSGCCQWR*VVSYRV 272
           S + +P   N  TS CC+W+ V   RV
Sbjct: 48  SESVLPTWTNDTTSDCCRWKGVACNRV 74


>At4g04990.1 68417.m00728 expressed protein contains Pfam domain
           PF05553: Cotton fiber expressed protein
          Length = 303

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 213 AHSPAWSERPTPN*DTYSVSYEKAPRFPKGERRTG 109
           + SP+ + RPTP+  + S S  +A R P    R G
Sbjct: 209 SRSPSRARRPTPSLSSLSPSSSRARRPPSSPARPG 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,231,215
Number of Sequences: 28952
Number of extensions: 273048
Number of successful extensions: 823
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)