Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0405
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 33 0.042
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 30 0.30
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 27 2.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.8
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p... 27 3.7
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb... 27 3.7
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.9
SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces... 26 4.9
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 26 6.4
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 26 6.4
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 8.5
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 8.5
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 25 8.5
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 25 8.5
SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr 2... 25 8.5
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 33.1 bits (72), Expect = 0.042
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 388 RSHPQADKHRNRTAERSRRGSRD*IEV*SHTHQEEVANPDSE-LELSLDVANKTNIDLQK 564
+S+P+ KH + ++ RGS D + S TH+ AN D + L L +AN L+K
Sbjct: 123 KSNPE--KHEDAVSQNRLRGSLDTVSSPSKTHK---ANKDEKATRLHLIIAN-----LKK 172
Query: 565 TIKKQSLQLTEIQTHYDEVQRQL 633
+K++ ++ +Q+H + +L
Sbjct: 173 ALKEKDAEVLNLQSHVSSKESEL 195
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 30.3 bits (65), Expect = 0.30
Identities = 17/78 (21%), Positives = 37/78 (47%)
Frame = +1
Query: 484 QEEVANPDSELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVA 663
Q ++A +LE L K+N DLQK+ + + L++++ E+++ L +
Sbjct: 498 QLKLAAEVPKLESQLSQVKKSNDDLQKSSRDVAANLSDVKAKVSEIRKAYDEELAKAKQI 557
Query: 664 QRRIQSLTGEVEEIRGNY 717
I++ + E++ Y
Sbjct: 558 SLDIETNKAQTEQVNREY 575
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Frame = +2
Query: 17 QSLTGEVEEIRGNYEQALR-VKAQSSSNTRNLRLA 118
Q L +EEIR +YE+ + +++Q+S+ +LRLA
Sbjct: 398 QKLLKFIEEIRNDYEERIHALESQNSALKAHLRLA 432
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 598 IQTHYDEVQRQLQVTLDQYGVAQRRIQSLTGEVEEIRGNYEQA 726
++ E++ +LQ T + ++++ SL EVE ++ EQA
Sbjct: 1364 LEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQA 1406
>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.6 bits (56), Expect = 3.7
Identities = 21/76 (27%), Positives = 33/76 (43%)
Frame = +1
Query: 487 EEVANPDSELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQ 666
++ AN SE SL V + L +T +L+ Q H R LQ D++G+A
Sbjct: 227 QQAANMMSESRFSLLVVDSCTA-LYRTDFSGRGELSARQMHLARFMRTLQRLADEFGIAV 285
Query: 667 RRIQSLTGEVEEIRGN 714
+ +V+ I N
Sbjct: 286 VITNQVVAQVDGISFN 301
>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 361 SSAREGRRNRSHPQADKHRNRTAERSRRG 447
SSAR G+RN + P +K + R + G
Sbjct: 25 SSARRGKRNHNLPHREKRKFARISRGKNG 53
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/66 (19%), Positives = 33/66 (50%)
Frame = +1
Query: 523 SLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSLTGEVEE 702
S D A K + +++K ++ + + DE+++Q++ D ++I+ L + +
Sbjct: 117 SEDKAAKPDGEIKKNVETEVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELKERIND 176
Query: 703 IRGNYE 720
+ +YE
Sbjct: 177 LTYDYE 182
>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 118
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 59 EQALRVKAQSSSNTRNLRLANRKTPSPAKTRKW 157
++ LRVK T+ L++ RKTP+ ++ W
Sbjct: 45 DKQLRVKGPVRLPTKILKITTRKTPNGEGSKTW 77
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 517 ELSLDVANKTNIDLQKTIKKQSLQ 588
E +VANKT + LQK + KQ Q
Sbjct: 144 EQKQEVANKTKLALQKILSKQIAQ 167
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 556 LQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSL 684
L+K + + E DE+Q +L++ D Y +RR +SL
Sbjct: 296 LEKKFEILKRERNECNAKIDELQDKLELLTDAYNREKRRARSL 338
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 416 EIEQLNARVVEAETKLKSEVTRIKKKLQIQILNWNS 523
E+ L +++ AET K E K LQ I W +
Sbjct: 192 EVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKN 227
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 8.5
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +1
Query: 538 NKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSLTGEVEEIRGNY 717
NKT I ++ + + EIQT +++ + + DQ R QSL +E ++ N
Sbjct: 301 NKT-ISYEEKLSIAQNSINEIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVK-ND 358
Query: 718 EQALR 732
E+ LR
Sbjct: 359 EKNLR 363
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +2
Query: 14 IQSLTGEVEEIRGNYEQALRVKAQSSSNTRNLRLANRKTPSPAKTR 151
+QS T V R E LR +S T++ A TPS A R
Sbjct: 36 VQSPTTGVHHERNRSEDILRTGGATSETTKDASAAGPVTPSFAMKR 81
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 589 LTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSLTGEVEEIRGNY 717
+ +Q H DE Q+QL + + RI +L V+E G Y
Sbjct: 156 MMNLQDHIDEFQKQLFSNFKRSNKNECRIAALVPLVQESYGIY 198
>SPBC13A2.02 |||nucleoporin Nup82|Schizosaccharomyces pombe|chr
2|||Manual
Length = 803
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 556 LQKTIKKQSLQLTEIQTHYDEVQRQLQVT 642
LQK + +QSL + E++T QR LQ +
Sbjct: 775 LQKLLAQQSLSIKELKTKTVSFQRLLQTS 803
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,785
Number of Sequences: 5004
Number of extensions: 37523
Number of successful extensions: 180
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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