Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0405
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 33 0.24
01_04_0002 - 14975469-14975578,14975668-14975732,14975858-149759... 32 0.41
07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915... 31 0.95
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 29 2.9
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 29 5.1
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 29 5.1
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 28 6.7
07_01_0348 - 2517072-2517323,2517963-2518160 28 6.7
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 6.7
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 28 8.9
02_02_0554 - 11434744-11435364,11435741-11436442 28 8.9
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/71 (22%), Positives = 35/71 (49%)
Frame = +1
Query: 511 ELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSLTG 690
E E L+V + DL+K ++++ L ++ + +L T+D++ +SL
Sbjct: 2325 EEERELEVLENKSNDLEKMLQEKEFALKSLEVSRTKALTKLATTVDKFDELHSLSESLLA 2384
Query: 691 EVEEIRGNYEQ 723
EVE ++ ++
Sbjct: 2385 EVENLQSQLQE 2395
>01_04_0002 -
14975469-14975578,14975668-14975732,14975858-14975943,
14976838-14976890,14977168-14977189,14978557-14978650,
14979101-14979273,14979543-14979658,14979817-14979994
Length = 298
Score = 32.3 bits (70), Expect = 0.41
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 24 SPERLRRFVATTSRPYALRLSRAAIRGISDSRTERRPRPR 143
+P R V+TT+ P+++ LS AA R RRPRPR
Sbjct: 14 TPTSRPRPVSTTTAPFSVNLSTAAARAPRLLLLSRRPRPR 53
>07_03_0699 +
20772415-20773450,20789050-20789606,20790971-20791567,
20792258-20792413
Length = 781
Score = 31.1 bits (67), Expect = 0.95
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = -1
Query: 446 PRRERSAVRFRCLSACGWLRFLLPSLADDA-QPHDGTGR-TQPSISVSAVPHLAASFGLL 273
PRR ++ RC++AC W A DA PH GR P ++ P G L
Sbjct: 109 PRRSYGYLK-RCIAACSWSSMARWCQARDAPAPHPARGRGVHPRQPIAVAPAARHGAGCL 167
Query: 272 VG 267
+G
Sbjct: 168 LG 169
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 547 NIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSLTGEVEEIR 708
N++L++TIK ++ Y + QL+ TL++ +R + + T EVEE+R
Sbjct: 446 NVELKETIKHHE----GVKALYVDNLMQLERTLERNAHLERSLSAATTEVEELR 495
>11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 43 DSWQLRAGPTR*GSVEQQYEESQTREQKDALARENKKMGDDLHDARA 183
D WQLR+G GSV + + + + D + R + DD +D A
Sbjct: 1107 DDWQLRSGGDTPGSVREAPKYKRLCKYADKIKRVSSMSLDDRYDIAA 1153
>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/75 (18%), Positives = 36/75 (48%)
Frame = +1
Query: 484 QEEVANPDSELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVA 663
++ VAN + LE L + + +T+ + ++ I+ YD+ + +L + +
Sbjct: 820 KDAVANELAMLEEQLTTSKAQIAAMTETLNRHQTKVASIKQDYDQAESELNIGRSKLKEC 879
Query: 664 QRRIQSLTGEVEEIR 708
+I S+ E ++++
Sbjct: 880 DSQINSMAKEQQKLQ 894
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 14 IQSLTGEVEEIRGNYEQALRVKAQSSSNTRNL-RLANRKTPSPAK 145
+Q LT EV +I+ + + LR+ + +NL RL + TP P K
Sbjct: 275 VQPLTCEVCKIQCDTPEVLRIHKTGKKHKKNLERLQDSITPKPVK 319
>07_01_0348 - 2517072-2517323,2517963-2518160
Length = 149
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 407 SACGWLRFLLPSL--ADDAQPHDGTGRTQPS-ISVSAVPHLA 291
S CG + + + A DA HDG G P+ + V A PH+A
Sbjct: 49 SICGLVNHMRDWIVSAMDAPAHDGVGEAAPNLVPVLAAPHVA 90
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 28.3 bits (60), Expect = 6.7
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 535 ANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSLTGEVEEIRGN 714
ANK LQKTI++ T Y +++ T + AQ Q L ++EE N
Sbjct: 1368 ANKKTDLLQKTIERLEEGATTTDALYLTERQEHDQTKKAFSEAQEINQQLYRKIEEAEKN 1427
Query: 715 YEQ 723
EQ
Sbjct: 1428 IEQ 1430
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/72 (19%), Positives = 30/72 (41%)
Frame = +1
Query: 505 DSELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSL 684
+ LEL + AN+ Q+ + +L +++ D +R + + + + +
Sbjct: 485 EHNLELRVKAANEAETACQQRLSIAEAELEDLRAKVDASERDVMKLKESIRIKEAEVDGH 544
Query: 685 TGEVEEIRGNYE 720
E+E I YE
Sbjct: 545 ISEIETIGQAYE 556
>02_02_0554 - 11434744-11435364,11435741-11436442
Length = 440
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Frame = +1
Query: 484 QEEVANPDSEL-ELSLDVAN--KTNIDLQKTIKKQSLQLTEIQTHYDEVQRQL 633
++EV +P+ + +L++ V K NI+L+ + ++LTE++ ++D + R L
Sbjct: 362 EDEVKSPEPSVHKLAVQVKKLRKENIELRDRNAELGVELTELRNNFDTLSRGL 414
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,432,074
Number of Sequences: 37544
Number of extensions: 314394
Number of successful extensions: 1181
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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