Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0405
(737 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) famil... 33 0.20
At1g06530.1 68414.m00692 myosin heavy chain-related similar to m... 32 0.35
At3g05270.1 68416.m00575 expressed protein similar to endosome-a... 31 1.1
At1g60610.2 68414.m06823 expressed protein 31 1.1
At1g60610.1 68414.m06822 expressed protein 31 1.1
At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almos... 30 1.4
At4g31570.1 68417.m04483 expressed protein 30 1.4
At3g13040.2 68416.m01625 myb family transcription factor contain... 30 1.4
At3g13040.1 68416.m01624 myb family transcription factor contain... 30 1.4
At1g74560.1 68414.m08638 nucleosome assembly protein (NAP) famil... 30 1.8
At1g64430.1 68414.m07302 expressed protein 30 1.8
At1g55250.1 68414.m06310 expressed protein weak similarity to PU... 30 1.8
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo... 29 4.3
At4g18600.1 68417.m02755 expressed protein 29 4.3
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ... 29 4.3
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ... 29 4.3
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ... 29 4.3
At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR... 28 5.6
At3g12020.1 68416.m01490 kinesin motor protein-related similar t... 28 7.4
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 27 9.8
At1g15770.1 68414.m01892 expressed protein 27 9.8
>At1g18800.1 68414.m02343 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105|SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile
PF00956: Nucleosome assembly protein (NAP)
Length = 256
Score = 33.1 bits (72), Expect = 0.20
Identities = 15/50 (30%), Positives = 30/50 (60%)
Frame = +1
Query: 478 THQEEVANPDSELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQR 627
T +E V D+EL LS++ + DL+K +K S ++ E++ Y+ +++
Sbjct: 11 TEEENVEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 60
>At1g06530.1 68414.m00692 myosin heavy chain-related similar to
myosin heavy chain (GI:1408194) {Placopecten
magellanicus}; similar to Myosin heavy chain, clone 203
(Fragment) (SP:P39922){Hydra attenuata}; contains one
transmembrane domain
Length = 323
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +1
Query: 592 TEIQTHYDEVQRQLQVTLDQYGVAQRRIQSLTGEVEEIRGNYEQALR 732
TE+ +++ Q Q R+I+SLT E+EE+RG +A R
Sbjct: 32 TELNQKIGDLESQNQELARDNDAINRKIESLTAEIEELRGAESKAKR 78
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 8 RRIQSLTGEVEEIRGNYEQALR 73
R+I+SLT E+EE+RG +A R
Sbjct: 57 RKIESLTAEIEELRGAESKAKR 78
>At3g05270.1 68416.m00575 expressed protein similar to
endosome-associated protein (EEA1) (GI:1016368) [Homo
sapiens]; similar to smooth muscle myosin heavy chain
(GI:4417214) [Homo sapiens; contains Pfam profile
PF05911: Plant protein of unknown function (DUF869)
Length = 615
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Frame = +1
Query: 505 DSELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYD---EVQRQLQVTLDQYGVAQRRI 675
+ ELEL L + K DLQ+ + K + L+E++T E+ L T Q +Q R+
Sbjct: 407 NQELELLLGESGKQMEDLQRQLNKAQVNLSELETRRAEKLELTMCLNGTKKQLETSQNRL 466
Query: 676 QSLTGEVEEIR 708
+ ++ E++
Sbjct: 467 KETERKLTELQ 477
>At1g60610.2 68414.m06823 expressed protein
Length = 340
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 478 THQEEVANPDSELELSLDVA-NKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQY 654
T + +L++SL+ N N +Q + KQ+L T ++ YD+ +R VT
Sbjct: 68 TENNNIMQRQQKLQISLNYNYNNNNTVVQDEVPKQNLVSTGLRLSYDDDERNSSVTSANG 127
Query: 655 GVAQRRIQSL 684
+ QSL
Sbjct: 128 SITTPVYQSL 137
>At1g60610.1 68414.m06822 expressed protein
Length = 340
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 478 THQEEVANPDSELELSLDVA-NKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQY 654
T + +L++SL+ N N +Q + KQ+L T ++ YD+ +R VT
Sbjct: 68 TENNNIMQRQQKLQISLNYNYNNNNTVVQDEVPKQNLVSTGLRLSYDDDERNSSVTSANG 127
Query: 655 GVAQRRIQSL 684
+ QSL
Sbjct: 128 SITTPVYQSL 137
>At5g41790.1 68418.m05088 COP1-interactive protein 1 / CIP1 almost
identical to CIP1 (GI:836950) [Arabidopsis thaliana]
Length = 1305
Score = 30.3 bits (65), Expect = 1.4
Identities = 29/115 (25%), Positives = 49/115 (42%)
Frame = +1
Query: 379 RRNRSHPQADKHRNRTAERSRRGSRD*IEV*SHTHQEEVANPDSELELSLDVANKTNIDL 558
+ + S + K + ER G RD E THQ E + SELE L + + +DL
Sbjct: 449 QEHMSESEQLKESHGVKERELTGLRDIHE----THQRESSTRLSELETQLKLLEQRVVDL 504
Query: 559 QKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSLTGEVEEIRGNYEQ 723
++ + + + L++T D+ AQ ++Q L E+ E + Q
Sbjct: 505 SASLNAAEEEKKSLSSMI------LEIT-DELKQAQSKVQELVTELAESKDTLTQ 552
Score = 27.9 bits (59), Expect = 7.4
Identities = 21/82 (25%), Positives = 40/82 (48%)
Frame = +1
Query: 478 THQEEVANPDSELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYG 657
THQ E + SELE L+ + + DL +K + I + + L++ +D+
Sbjct: 323 THQRESSTRVSELEAQLESSEQRISDLTVDLKDAEEENKAISS------KNLEI-MDKLE 375
Query: 658 VAQRRIQSLTGEVEEIRGNYEQ 723
AQ I+ L E+ E++ +++
Sbjct: 376 QAQNTIKELMDELGELKDRHKE 397
>At4g31570.1 68417.m04483 expressed protein
Length = 2712
Score = 30.3 bits (65), Expect = 1.4
Identities = 9/52 (17%), Positives = 33/52 (63%)
Frame = +1
Query: 553 DLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSLTGEVEEIR 708
+L++ +++++L L + + ++ ++L +T+D++ ++L E+E+++
Sbjct: 2405 ELEQEVQQKNLDLQKAEASRGKISKKLSITVDKFDELHHLSENLLAEIEKLQ 2456
>At3g13040.2 68416.m01625 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 449
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +1
Query: 472 SHTHQEEVAN--PDSELELSLDVANKTNIDLQKTI----KKQSLQLTEIQTHYDEVQRQL 633
SH + +A P+ + E D + + + L K+ KK ++QLTE EVQ+QL
Sbjct: 288 SHLQKYRLAKYMPEKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLTEALRMQMEVQKQL 347
Query: 634 QVTLDQYGVAQRRIQSLTGEVEEI 705
L+ V Q RI+ +E++
Sbjct: 348 HEQLEVQRVLQLRIEEHAKYLEKM 371
>At3g13040.1 68416.m01624 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 449
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = +1
Query: 472 SHTHQEEVAN--PDSELELSLDVANKTNIDLQKTI----KKQSLQLTEIQTHYDEVQRQL 633
SH + +A P+ + E D + + + L K+ KK ++QLTE EVQ+QL
Sbjct: 288 SHLQKYRLAKYMPEKKEEKRTDNSEEKKLALSKSEADEKKKGAIQLTEALRMQMEVQKQL 347
Query: 634 QVTLDQYGVAQRRIQSLTGEVEEI 705
L+ V Q RI+ +E++
Sbjct: 348 HEQLEVQRVLQLRIEEHAKYLEKM 371
>At1g74560.1 68414.m08638 nucleosome assembly protein (NAP) family
protein similar to SP|Q01105 SET protein (HLA-DR
associated protein II) (PHAPII) (Phosphatase 2A
inhibitor I2PP2A) {Homo sapiens}; contains Pfam profile:
PF00956 nucleosome assembly protein (NAP)
Length = 256
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/48 (27%), Positives = 29/48 (60%)
Frame = +1
Query: 484 QEEVANPDSELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQR 627
+E + D+EL LS++ + DL+K +K S ++ E++ Y+ +++
Sbjct: 17 EENLEQIDAELVLSIEKLQEIQDDLEKINEKASDEVLEVEQKYNVIRK 64
>At1g64430.1 68414.m07302 expressed protein
Length = 559
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 505 DSELELSLDVANKTNIDLQKTIKKQSL-QLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQS 681
D L L VA T++ + T+ L +L ++ +V Q L QY V QRRI+
Sbjct: 378 DPSLPQLLSVATVTSLAIGATVNSFVLPKLNQLPERTVDVVGIKQQLLSQYDVLQRRIRD 437
Query: 682 LTGEVEE 702
L VE+
Sbjct: 438 LKEAVEK 444
>At1g55250.1 68414.m06310 expressed protein weak similarity to PUMA1
[Parascaris univalens] GI:3068590
Length = 522
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 553 DLQKTIKKQSLQLTE-IQTHYDEVQRQLQVTLDQYGVAQRRIQSLTGEVEEIRGNYEQAL 729
DL K K ++ + + + E Q+Q + + Q ++ L G++EEI+ E+
Sbjct: 228 DLMKEESKNLREMIDALHVRHKEHSEQIQAYISSHSTDQSELKHLKGQLEEIKAELEENR 287
Query: 730 R 732
R
Sbjct: 288 R 288
>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
Length = 124
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 44 IRGNYEQALRVKAQSSSNTRNLRLANRKTPSPAKTRKW 157
+RG ++ LRVK T+ L++ RK P T W
Sbjct: 45 VRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTW 82
>At4g18600.1 68417.m02755 expressed protein
Length = 1907
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 478 THQEEVANPDSELELSLDVANKTNIDLQKTIKKQSLQLTE 597
TH A +S+ +SL+V N TN+ + I + + L E
Sbjct: 1005 THTLSCAKAESDEHVSLEVLNSTNLSAAEAIPNEQVTLDE 1044
>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 44 IRGNYEQALRVKAQSSSNTRNLRLANRKTPSPAKTRKW 157
+RG ++ LRVK T+ L++ RK P T W
Sbjct: 43 VRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTW 80
>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 44 IRGNYEQALRVKAQSSSNTRNLRLANRKTPSPAKTRKW 157
+RG ++ LRVK T+ L++ RK P T W
Sbjct: 43 VRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTW 80
>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
Length = 124
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 44 IRGNYEQALRVKAQSSSNTRNLRLANRKTPSPAKTRKW 157
+RG ++ LRVK T+ L++ RK P T W
Sbjct: 45 VRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTW 82
>At1g63740.1 68414.m07213 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 992
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/76 (23%), Positives = 37/76 (48%)
Frame = +1
Query: 421 RTAERSRRGSRD*IEV*SHTHQEEVANPDSELELSLDVANKTNIDLQKTIKKQSLQLTEI 600
+T E+ RR S+ +V + E N D+E ++ +A + + TI + + +
Sbjct: 89 KTEEKRRRWSQALNDV-GNIAGEHFLNWDNESKMMEKIARDISNKVNTTISRDFEDMVGV 147
Query: 601 QTHYDEVQRQLQVTLD 648
+TH +++Q L + D
Sbjct: 148 ETHLEKIQSLLHLDND 163
>At3g12020.1 68416.m01490 kinesin motor protein-related similar to
putative kinesin heavy chain GB:AAD23684 GI:4567271 from
[Arabidopsis thaliana]
Length = 1030
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1
Query: 484 QEEVANPDSELELSLDVANKTNI-DLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGV 660
QEEVAN +L +L++A T I +L++ K+ S +++ ++ +
Sbjct: 821 QEEVANLKQQLSEALELAQGTKIKELKQDAKELSESKEQLELRNRKLAEESSYAKGLASA 880
Query: 661 AQRRIQSLTGEVEEIRGNYEQ 723
A +++L+ EV ++ E+
Sbjct: 881 AAVELKALSEEVAKLMNQNER 901
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 361 SSAREGRRNRS-HPQADKHRNRTAERSRRGSR 453
S +R RR+RS H +HR+R+ RSR S+
Sbjct: 155 SRSRSERRSRSEHRHKSEHRSRSRSRSRSKSK 186
>At1g15770.1 68414.m01892 expressed protein
Length = 332
Score = 27.5 bits (58), Expect = 9.8
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +1
Query: 517 ELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQ-VTLDQYGVAQRRIQSLTG- 690
E+ VA K L+KT++K L +EIQ + + +Q + D Q + S+ G
Sbjct: 117 EIYQRVAAKLQQSLRKTVQKLQLTKSEIQPMQQPLSQTVQDQSHDDQTTLQMQSMSMQGA 176
Query: 691 --EVEEIRGNYEQALRV 735
V++IR Q+L +
Sbjct: 177 GSRVQQIRQGVLQSLEI 193
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,254,634
Number of Sequences: 28952
Number of extensions: 223698
Number of successful extensions: 881
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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