Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0404
         (827 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    25   0.55 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   9.0  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    21   9.0  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.0  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 175 HHASHHPFSCFRGRGRLSVRESEIPRIAARLSLNA 71
           HH + H  +CF  RG L +   E  ++   L L+A
Sbjct: 367 HHLARHAVACFLTRGDLWLSWEEGMKVFEELLLDA 401


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 33  RLRRFVATTSRPYALRLSRAAIRGIS 110
           RL   V++ S+P ALRLS + +  ++
Sbjct: 376 RLVLTVSSVSKPEALRLSGSVVTKVT 401


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
 Frame = +3

Query: 81  LSRAAIRGIS----DSRTERRPRPRKQE 152
           LS +++ G S    DS+ ++ P PR+QE
Sbjct: 158 LSPSSLNGYSADSCDSKKKKGPTPRQQE 185


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = -3

Query: 255 LSLVLKTAQLDFELVETAVQLGDVRASIMQ 166
           L+L+    Q  FE++   +  GDV ++ ++
Sbjct: 105 LNLIFLLIQTRFEMINNIITRGDVTSTTIK 134


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 172 HASHHPFSCFRGRGRLSVR 116
           H +  PF C + RGR   R
Sbjct: 241 HTNEKPFECDKCRGRFRRR 259


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,662
Number of Sequences: 336
Number of extensions: 2394
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22725411
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)