Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0404
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 33 0.28
01_04_0002 - 14975469-14975578,14975668-14975732,14975858-149759... 32 0.48
07_03_0532 + 19171290-19171394,19173122-19173302,19173761-191742... 32 0.64
07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915... 31 1.1
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751... 29 3.4
05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19... 29 4.5
11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,400... 29 6.0
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 29 6.0
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 29 6.0
10_05_0043 + 8503979-8504407,8506484-8506624,8506865-8506975,850... 28 7.9
07_01_0348 - 2517072-2517323,2517963-2518160 28 7.9
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 28 7.9
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 33.1 bits (72), Expect = 0.28
Identities = 16/71 (22%), Positives = 35/71 (49%)
Frame = +1
Query: 511 ELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSLTG 690
E E L+V + DL+K ++++ L ++ + +L T+D++ +SL
Sbjct: 2325 EEERELEVLENKSNDLEKMLQEKEFALKSLEVSRTKALTKLATTVDKFDELHSLSESLLA 2384
Query: 691 EVEEIRGNYEQ 723
EVE ++ ++
Sbjct: 2385 EVENLQSQLQE 2395
>01_04_0002 -
14975469-14975578,14975668-14975732,14975858-14975943,
14976838-14976890,14977168-14977189,14978557-14978650,
14979101-14979273,14979543-14979658,14979817-14979994
Length = 298
Score = 32.3 bits (70), Expect = 0.48
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 24 SPERLRRFVATTSRPYALRLSRAAIRGISDSRTERRPRPR 143
+P R V+TT+ P+++ LS AA R RRPRPR
Sbjct: 14 TPTSRPRPVSTTTAPFSVNLSTAAARAPRLLLLSRRPRPR 53
>07_03_0532 +
19171290-19171394,19173122-19173302,19173761-19174245,
19174877-19176283,19176413-19176628
Length = 797
Score = 31.9 bits (69), Expect = 0.64
Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Frame = +1
Query: 481 HQEEVANPDS-ELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYG 657
H+ VA S EL+ L++ ++ ++ + E++ + ++ LD+
Sbjct: 379 HRAMVAEEKSVELQRQLNLVKGVKHSMETEMEAMENRRNELEGRIELAHGEITSLLDKGR 438
Query: 658 VAQRRIQSLTGEVEEIRGNYEQAYALRLSRAAIRG 762
+ + R++S E+ Y+Q AL R +RG
Sbjct: 439 ILEERLESEKALTLELAAKYQQMDALEAERRELRG 473
>07_03_0699 +
20772415-20773450,20789050-20789606,20790971-20791567,
20792258-20792413
Length = 781
Score = 31.1 bits (67), Expect = 1.1
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Frame = -1
Query: 446 PRRERSAVRFRCLSACGWLRFLLPSLADDA-QPHDGTGR-TQPSISVSAVPHLAASFGLL 273
PRR ++ RC++AC W A DA PH GR P ++ P G L
Sbjct: 109 PRRSYGYLK-RCIAACSWSSMARWCQARDAPAPHPARGRGVHPRQPIAVAPAARHGAGCL 167
Query: 272 VG 267
+G
Sbjct: 168 LG 169
>12_02_1035 -
25570009-25571241,25571940-25573709,25573797-25575118,
25575208-25575555,25576540-25576633
Length = 1588
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 547 NIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSLTGEVEEIR 708
N++L++TIK ++ Y + QL+ TL++ +R + + T EVEE+R
Sbjct: 446 NVELKETIKHHE----GVKALYVDNLMQLERTLERNAHLERSLSAATTEVEELR 495
>05_01_0029 +
187769-188707,188971-189246,189978-190174,190263-190404,
190584-190862,190941-191013,191331-191379,192169-192433,
192576-192631,192777-192845,193028-193139,193682-193771,
193955-194125,194449-194506,194970-195128,195379-195401
Length = 985
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +1
Query: 646 DQYGVAQRRIQSLTGEVEEIRGNYEQAYALRLSRAAI 756
++ G+ QR +Q L E E +Y +YAL LSR+A+
Sbjct: 645 EKVGIHQRYLQWLIEEQECDEPHYHTSYALSLSRSAM 681
>11_01_0515 + 4003167-4003229,4003318-4003738,4004224-4004367,
4004474-4004556,4004661-4004775,4005309-4005400,
4005558-4005612,4005689-4005834,4005888-4006001,
4006149-4006342,4006985-4007112,4008526-4008583,
4009800-4009876,4010214-4010263,4010336-4010515,
4010633-4010731,4010816-4011133,4011221-4011281,
4011693-4012781,4012951-4013005,4013133-4013291,
4013923-4014442
Length = 1406
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 43 DSWQLRAGPTR*GSVEQQYEESQTREQKDALARENKKMGDDLHDARA 183
D WQLR+G GSV + + + + D + R + DD +D A
Sbjct: 1107 DDWQLRSGGDTPGSVREAPKYKRLCKYADKIKRVSSMSLDDRYDIAA 1153
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 28.7 bits (61), Expect = 6.0
Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = +1
Query: 505 DSELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSL 684
+ +L ++VAN+ L+ T+K ++T ++Q + + G AQ+R++ L
Sbjct: 1037 NDDLTKKVEVANENFKQLKDTLKSFEESTKGLETSLMMERQQNEANRREVGEAQQRVEEL 1096
Query: 685 TGEVEEIRGNYE--QAYALRLSRAAIRGSQTRVNE 783
V + G Q RL ++ I T + E
Sbjct: 1097 LRLVADANGKSTSLQTTVQRLEQSLIEKEATWLTE 1131
>01_06_1713 - 39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/75 (18%), Positives = 36/75 (48%)
Frame = +1
Query: 484 QEEVANPDSELELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVA 663
++ VAN + LE L + + +T+ + ++ I+ YD+ + +L + +
Sbjct: 820 KDAVANELAMLEEQLTTSKAQIAAMTETLNRHQTKVASIKQDYDQAESELNIGRSKLKEC 879
Query: 664 QRRIQSLTGEVEEIR 708
+I S+ E ++++
Sbjct: 880 DSQINSMAKEQQKLQ 894
>10_05_0043 +
8503979-8504407,8506484-8506624,8506865-8506975,
8507746-8508330
Length = 421
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 14 IQSLTGEVEEIRGNYEQALRVKAQSSSNTRNL-RLANRKTPSPAK 145
+Q LT EV +I+ + + LR+ + +NL RL + TP P K
Sbjct: 275 VQPLTCEVCKIQCDTPEVLRIHKTGKKHKKNLERLQDSITPKPVK 319
>07_01_0348 - 2517072-2517323,2517963-2518160
Length = 149
Score = 28.3 bits (60), Expect = 7.9
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = -1
Query: 407 SACGWLRFLLPSL--ADDAQPHDGTGRTQPS-ISVSAVPHLA 291
S CG + + + A DA HDG G P+ + V A PH+A
Sbjct: 49 SICGLVNHMRDWIVSAMDAPAHDGVGEAAPNLVPVLAAPHVA 90
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 28.3 bits (60), Expect = 7.9
Identities = 20/63 (31%), Positives = 28/63 (44%)
Frame = +1
Query: 535 ANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQRRIQSLTGEVEEIRGN 714
ANK LQKTI++ T Y +++ T + AQ Q L ++EE N
Sbjct: 1368 ANKKTDLLQKTIERLEEGATTTDALYLTERQEHDQTKKAFSEAQEINQQLYRKIEEAEKN 1427
Query: 715 YEQ 723
EQ
Sbjct: 1428 IEQ 1430
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,034,840
Number of Sequences: 37544
Number of extensions: 350363
Number of successful extensions: 1281
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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