Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0404
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.16 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     26   0.49 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   6.0  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            22   6.0  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   8.0  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   8.0  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   8.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 517 ELSLDVANKTNIDLQKTIKKQSLQLTEIQTHYDEVQRQLQVTLDQYGVAQ 666
           +L L+V  +T++      KK S  L ++      + +QLQ+T  QY + Q
Sbjct: 152 QLQLNVIQQTHLLQTADKKKASAPLQQLALQQQRLIQQLQITQSQYLLQQ 201


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 25.8 bits (54), Expect = 0.49
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 175 HHASHHPFSCFRGRGRLSVRESEIPRIAARLSLNA 71
           HH + H  +CF  RG L +   E  ++   L L+A
Sbjct: 371 HHLARHAVACFLTRGDLWISWEEGMKVFDELLLDA 405


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +1

Query: 88   EQQYEESQTREQKDALARENKKMGDDLHDARA 183
            +QQ ++ Q ++Q+   ARE + +G  + +  A
Sbjct: 1220 QQQQQQQQQQQQQQHQAREREGVGAGIAETSA 1251


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 104 NLRLANRKTPSPAKTRK 154
           NL  +NRK P+PA  +K
Sbjct: 384 NLDPSNRKLPAPANWKK 400


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = +2

Query: 470 EVTRIKKKLQIQILNWNSLLMW 535
           +V ++KKK + + LN N +++W
Sbjct: 2   KVHQLKKKRRKKNLNQNQMMIW 23


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 52  QLRAGPTR*GSVEQQYEESQTREQKDALARENKKMG 159
           QL  G  +  S E  Y E++  E K  ++   KK+G
Sbjct: 74  QLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIG 109


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 52  QLRAGPTR*GSVEQQYEESQTREQKDALARENKKMG 159
           QL  G  +  S E  Y E++  E K  ++   KK+G
Sbjct: 90  QLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIG 125


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 52  QLRAGPTR*GSVEQQYEESQTREQKDALARENKKMG 159
           QL  G  +  S E  Y E++  E K  ++   KK+G
Sbjct: 147 QLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIG 182


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +1

Query: 91  QQYEESQTREQKDALARENKKMG 159
           QQ ++ Q ++Q+D   ++  +MG
Sbjct: 89  QQQQQQQQQQQQDQQQQQQSRMG 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,870
Number of Sequences: 438
Number of extensions: 3322
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)