Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0403
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)    120   2e-27
SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)           34   0.11 
SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)                 31   1.1  
SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)              31   1.4  
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)               29   3.2  
SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)                 29   5.7  
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)                     28   7.5  
SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_45400| Best HMM Match : MAM (HMM E-Value=0)                         28   9.9  
SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64)                    28   9.9  
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_7842| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.9  

>SB_54916| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=4.76441e-44)
          Length = 210

 Score =  120 bits (288), Expect = 2e-27
 Identities = 47/85 (55%), Positives = 65/85 (76%)
 Frame = +1

Query: 253 PAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYL 432
           PAY S+KA+ES QKDDDT+WL YWVV+A F+IVE+FSD ++ WFPLY+L K IF+ WC  
Sbjct: 73  PAYQSVKAVESVQKDDDTQWLIYWVVFASFNIVEFFSDILLSWFPLYFLTKLIFLGWCMA 132

Query: 433 PTEYNGSLVIYYRIIRPYYQKHHGR 507
           P  +NGS  +Y ++I+P+  +H  +
Sbjct: 133 PVSWNGSDTLYQKVIKPFVLRHQSQ 157



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 28/62 (45%), Positives = 40/62 (64%)
 Frame = +2

Query: 71  DNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFV 250
           +N+E  L +K+  +T      E+K  V +LY+FLGLV    LYL+FG+GA+LI   +GF 
Sbjct: 13  ENLENWLEEKNY-FTDALGKVEEKTKVKKLYLFLGLVGVFSLYLIFGYGADLIVTVLGFA 71

Query: 251 YP 256
           YP
Sbjct: 72  YP 73


>SB_28902| Best HMM Match : TB2_DP1_HVA22 (HMM E-Value=0.088)
          Length = 110

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 253 PAYMSMKALESPQKDDDTKWLTYW 324
           P Y S+ A+E+P  +  TKWL YW
Sbjct: 87  PVYASISAIENPDYEIGTKWLMYW 110



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 155 RLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYP 256
           R+ + L +V FT LY+  G+ A   CN I  V+P
Sbjct: 55  RIQVLL-MVLFTLLYVAEGYAAACFCNVIAVVFP 87


>SB_52129| Best HMM Match : Sec23_trunk (HMM E-Value=0)
          Length = 942

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 249 TKPIELHINSAPKPNTKYKPVNATKPKKMYNLFTPTFCSA 130
           T+P+  H  S+P+P + + PVN T P       TP   +A
Sbjct: 225 TQPLSSHSGSSPQPGSAFSPVN-TPPNAQAQQMTPPSSAA 263


>SB_13207| Best HMM Match : Extensin_2 (HMM E-Value=0.061)
          Length = 2735

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -2

Query: 516  YHRTTMMLL---VVRTNDTVVDHEGPVVFSRQVAPDHEDAL*QPVQWKPADDEIGKVLHD 346
            YHR  ++L    +V    +VV H+ PVV  R     H+  +   V  +P       ++H 
Sbjct: 1369 YHRPDVVLHRPDIVIHRPSVVLHQAPVVVHRPAVVYHQPPV---VVHQPPPLVHQPIIHS 1425

Query: 345  RKTGVHHPICKPF 307
              T V HP  +PF
Sbjct: 1426 HDTYVSHPFFEPF 1438


>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
          Length = 1724

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 134 RLVQNISSMACFCRSDFVLCCLYTLVIWMPL 42
           R ++NI +  C   S F LCC + L  W+ L
Sbjct: 100 RTLENIRARRCMRTSAFGLCCRFILAHWVKL 130


>SB_48778| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 164  IFLGLVAFTGLYLVFGFGAELICNSIGFVY-PRTCL 268
            I++ L +  G   VFGFGA L+ + + +V+ P  CL
Sbjct: 1008 IYVRLASVMGFTWVFGFGAALLWSPLWYVFVPLNCL 1043


>SB_37980| Best HMM Match : 7tm_2 (HMM E-Value=5.3e-13)
          Length = 1297

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +2

Query: 164  IFLGLVAFTGLYLVFGFGAELICNSIGFVY-PRTCL 268
            I++ L A  G   VFGF AEL+   + +V+ P  CL
Sbjct: 1198 IYVRLAAVMGFTWVFGFLAELLWTPLWYVFIPLNCL 1233


>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 337 CFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLPTEYNGSLVIY 465
           C ++V       +G F +++  +C     CY+P + NGS  IY
Sbjct: 374 CVTVVHDPPFLKIGEFNIFYDKECTLEHVCYVPVQLNGSESIY 416


>SB_34458| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1318

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 28/98 (28%), Positives = 39/98 (39%)
 Frame = -1

Query: 538 RREAVLAISSYDHDASGSKDE*YGSRSRGTRCIQSAGSTRSRRCTLTASTMETSRR*NRK 359
           RREA     + D+ AS  K E YG+R R      S GS+  RR         +       
Sbjct: 705 RREAYGRSRTEDYGASREKRESYGTRERK----DSRGSSGERRELYIKPFQASGPSYQAP 760

Query: 358 STPR*KNRRTPPNM*AILYRHPSAVTPEPS*TCTRVHE 245
           S    K  +  P M ++ Y  PS+     S + TR  +
Sbjct: 761 SNVESKQSQPIPAMTSVYYTPPSSPESRSSSSGTRASQ 798


>SB_13243| Best HMM Match : COX17 (HMM E-Value=1.7)
          Length = 483

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 259 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 411
           Y+  + +  P+K  D  WL  +     + +  YF + I  +F   WL KCI
Sbjct: 308 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 356


>SB_5363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 297

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 259 YMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCI 411
           Y+  + +  P+K  D  WL  +     + +  YF + I  +F   WL KCI
Sbjct: 122 YLWGQDISDPRKFLDNTWLKVFKFQPLWKVKNYFGEQIALYFA--WLGKCI 170


>SB_47115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -3

Query: 326 TQYVSHFVSSSFCGDSRAFI 267
           T +V HFV + FCG++R+ +
Sbjct: 774 TAFVRHFVLARFCGENRSIV 793


>SB_45400| Best HMM Match : MAM (HMM E-Value=0)
          Length = 257

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 406 CIFVIWCYLPTEYNGSLVIYYRIIRP 483
           C+  + CY  + YN +  +YY  +RP
Sbjct: 162 CVEAVGCYRDSGYNRAFPVYYADLRP 187


>SB_19477| Best HMM Match : GST_C (HMM E-Value=0.64)
          Length = 1294

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 426 LPAD*IQRVPRDLLPYHSSLLPEASWSYDDMANTASRLVADTIRKT 563
           LP D ++R  R++LPY    L  A+ + ++  +  SR  A T+R T
Sbjct: 635 LPGDVLRRHLRNILPYLDGYLKSATDAVEEEQDQVSRRTA-TLRST 679


>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3292

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/79 (22%), Positives = 34/79 (43%)
 Frame = -2

Query: 273  LHRHVRGYTKPIELHINSAPKPNTKYKPVNATKPKKMYNLFTPTFCSASSKYFVHGLLLS 94
            ++ H     K + +++ + P      KP N  KP   Y+  T T+ S   +  +  L + 
Sbjct: 1262 IYLHREQIAKEVGINLMAFPDDVCSKKPCNYLKPNSYYDCNTYTYFSGEPQ-VLSSLKVV 1320

Query: 93   FRLCSMLSLYSCNLDAIVR 37
            FR   +   ++C+  A  R
Sbjct: 1321 FRTVPVDMKFNCSCPADYR 1339


>SB_7842| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 29  LKDRTMASKLQEYKDNIEQSLNDKSKPWTKYFELAE-QKVGVNRLYIFLG 175
           LKD+T ASK  E  +  EQS+  K +   K+  L + Q      +Y F G
Sbjct: 43  LKDKTKASKATEKPEIFEQSVMGKVQTNIKFHNLEDRQDYRDESVYTFCG 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,634,865
Number of Sequences: 59808
Number of extensions: 564382
Number of successful extensions: 1762
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)