Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0403
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024201-6|AAF36016.1| 183|Caenorhabditis elegans Hypothetical ... 107 1e-23
Z81113-6|CAD21647.2| 295|Caenorhabditis elegans Hypothetical pr... 93 2e-19
AF045646-11|AAK29829.1| 205|Caenorhabditis elegans Hypothetical... 85 4e-17
U28412-5|AAC46595.1| 229|Caenorhabditis elegans Hypothetical pr... 70 2e-12
Z83128-7|CAB05634.2| 243|Caenorhabditis elegans Hypothetical pr... 30 2.2
U97403-3|AAB52473.1| 142|Caenorhabditis elegans Hypothetical pr... 30 2.2
AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical... 30 2.2
AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical ... 30 2.2
AF078157-18|AAG24080.1| 338|Caenorhabditis elegans Seven tm rec... 29 2.9
AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical ... 29 5.0
Z81533-5|CAB04337.1| 342|Caenorhabditis elegans Hypothetical pr... 28 8.8
AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical ... 28 8.8
>AC024201-6|AAF36016.1| 183|Caenorhabditis elegans Hypothetical
protein Y71F9B.3 protein.
Length = 183
Score = 107 bits (256), Expect = 1e-23
Identities = 44/84 (52%), Positives = 64/84 (76%)
Frame = +1
Query: 253 PAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYL 432
PAYMS+KA+ES K+DDT+WLTYWV++A S+VE+FS IV FP+YWL K IF+++ YL
Sbjct: 72 PAYMSIKAIESSNKEDDTQWLTYWVIFAILSVVEFFSVQIVAVFPVYWLFKSIFLLYLYL 131
Query: 433 PTEYNGSLVIYYRIIRPYYQKHHG 504
P+ + G+ +Y+R ++P +H G
Sbjct: 132 PS-FLGAAKLYHRFVKPVAARHSG 154
Score = 65.7 bits (153), Expect = 4e-11
Identities = 29/68 (42%), Positives = 45/68 (66%)
Frame = +2
Query: 53 KLQEYKDNIEQSLNDKSKPWTKYFELAEQKVGVNRLYIFLGLVAFTGLYLVFGFGAELIC 232
++Q+ D++++ L++ S T EQK GV RL++ LG+V LYL+FG A+L+C
Sbjct: 6 QVQKVLDDVDKQLHEPSTV-TNVLATVEQKTGVKRLHLVLGVVGLQALYLIFGHSAQLVC 64
Query: 233 NSIGFVYP 256
N +GFVYP
Sbjct: 65 NFMGFVYP 72
>Z81113-6|CAD21647.2| 295|Caenorhabditis elegans Hypothetical
protein T03F6.6 protein.
Length = 295
Score = 93.5 bits (222), Expect = 2e-19
Identities = 37/78 (47%), Positives = 58/78 (74%)
Frame = +1
Query: 253 PAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYL 432
PAY+S+KA+ + DDDT WL YW V+ FSI+++F+ I+ +FP+YW+ K F+++ YL
Sbjct: 89 PAYVSVKAIRTEGTDDDTMWLIYWTVFGAFSIIDFFAASIMSYFPIYWVAKAAFLLYLYL 148
Query: 433 PTEYNGSLVIYYRIIRPY 486
P E +GS VIY+++I P+
Sbjct: 149 P-ETHGSHVIYHQLIDPF 165
Score = 41.1 bits (92), Expect = 9e-04
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +2
Query: 134 EQKVGVNRLYIFLGLVAFTGLYLVFGFGAELICNSIGFVYP 256
E G+ R + GL+ +Y++ G GAE +CN IG YP
Sbjct: 49 EDATGLKREMLAYGLIGLNCVYMIIGSGAEFVCNLIGVAYP 89
>AF045646-11|AAK29829.1| 205|Caenorhabditis elegans Hypothetical
protein F56B3.6 protein.
Length = 205
Score = 85.4 bits (202), Expect = 4e-17
Identities = 34/77 (44%), Positives = 51/77 (66%)
Frame = +1
Query: 253 PAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYL 432
P Y S+KA+ SP DDDT WL YW +A +V++FS+ I+ WFP Y++ K F+++ YL
Sbjct: 112 PTYASVKAIRSPGGDDDTVWLIYWTCFAVLYLVDFFSEAILSWFPFYYIAKACFLVYLYL 171
Query: 433 PTEYNGSLVIYYRIIRP 483
P + GS++ Y I+ P
Sbjct: 172 P-QTQGSVMFYETIVDP 187
Score = 36.3 bits (80), Expect = 0.025
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +2
Query: 161 YIFLGLVAFTGLYLVFGFGAELICNSIGFVYP 256
Y GL+AF +LVFG A L+CN IGF YP
Sbjct: 84 YAAFGLIAF---FLVFGSVARLLCNLIGFGYP 112
>U28412-5|AAC46595.1| 229|Caenorhabditis elegans Hypothetical
protein T19C3.4 protein.
Length = 229
Score = 69.7 bits (163), Expect = 2e-12
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = +1
Query: 253 PAYMSMKALESPQKDDDTKWLTYWVVYACFSIVEYFSDFIVG-WFPLYWLLKCIFVIWCY 429
PAY S KA+ + + KW+ YW+V+A +S +E D ++ WFP Y+ LK +F+ W
Sbjct: 18 PAYRSYKAVRTKDTREYVKWMMYWIVFAIYSFLENLLDLVLAFWFPFYFQLKIVFIFWLL 77
Query: 430 LPTEYNGSLVIYYRIIRPYYQKH 498
P G+ ++Y + + P +H
Sbjct: 78 SPWT-KGASILYRKWVHPTLNRH 99
>Z83128-7|CAB05634.2| 243|Caenorhabditis elegans Hypothetical
protein W01D2.3 protein.
Length = 243
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +1
Query: 244 LRVPAYMSMKALESPQ--KDDDTKWLTYWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV 417
+ V A S + E+P K+ ++ YW VYA F E F ++ W L + IF+
Sbjct: 135 MTVTAISSTSSYENPSFLKNHQDFFVRYWTVYAVFVTGESFLSSLIHWD--LRLFRLIFM 192
Query: 418 IWC 426
C
Sbjct: 193 SMC 195
>U97403-3|AAB52473.1| 142|Caenorhabditis elegans Hypothetical
protein T10E9.6 protein.
Length = 142
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 319 YWVVYACFSIVEYFSDFIVGWFPLYWLLKCIFVIWCYLP 435
YW ++ F Y D I+ + PLY+++K I +LP
Sbjct: 91 YWTIFGFF----YLFDRILEYIPLYYIIKLAVFIGLFLP 125
>AL110500-22|CAB60434.1| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 376 GWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRTMIWPTQLPVWWQ 546
GWFP+++ L CI + C L SL + + I+ KHHG P WW+
Sbjct: 1221 GWFPIFFELSCI-INRCKLDVR-TRSLTVMFEIM-----KHHGSDF-----RPEWWK 1265
>AL032650-3|CAA21704.2| 1628|Caenorhabditis elegans Hypothetical
protein Y6B3A.1a protein.
Length = 1628
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = +1
Query: 376 GWFPLYWLLKCIFVIWCYLPTEYNGSLVIYYRIIRPYYQKHHGRTMIWPTQLPVWWQ 546
GWFP+++ L CI + C L SL + + I+ KHHG P WW+
Sbjct: 1221 GWFPIFFELSCI-INRCKLDVR-TRSLTVMFEIM-----KHHGSDF-----RPEWWK 1265
>AF078157-18|AAG24080.1| 338|Caenorhabditis elegans Seven tm
receptor protein 28 protein.
Length = 338
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +1
Query: 322 WVVYACFSIVEYFSDFIVGWFPLYWLLKCIFV--IWCY 429
++ AC +S GW +YWLL C+ + +W Y
Sbjct: 110 FIYRACVLARPIWSKIFDGWKLIYWLLYCLIIGGLWSY 147
>AL032655-1|CAA21726.1| 995|Caenorhabditis elegans Hypothetical
protein Y6B3B.3 protein.
Length = 995
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +3
Query: 465 LPYHSSLLPEASWSYDDMANTASRLV 542
+P ++ LL EAS S+DD +NT+S ++
Sbjct: 652 VPKNALLLQEASESWDDFSNTSSNIL 677
>Z81533-5|CAB04337.1| 342|Caenorhabditis elegans Hypothetical
protein F36G9.8 protein.
Length = 342
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -2
Query: 180 TKPKKMYNLFTPTFCSASSKYFVHGLLLSFRLCSMLSLYSCNLDAIVRSFSG*P 19
T P ++ ++ FC LL F++CSM S + N+ + FS P
Sbjct: 21 TTPVNIFGVYVILFCQTKQLASYRWHLLVFQVCSMTSDFLLNIGMLPVIFSPFP 74
>AF016656-3|AAB66037.2| 515|Caenorhabditis elegans Hypothetical
protein C35A11.4 protein.
Length = 515
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 584 KKRAGLIGLSDGICHQTGSCVGHIIVRP*CF 492
K+ G IG+ G C Q G+ G +I P F
Sbjct: 148 KQNRGAIGMMTGTCVQLGTVCGSVIAMPQIF 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,694,074
Number of Sequences: 27780
Number of extensions: 434541
Number of successful extensions: 1239
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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