Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0394
         (551 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    27   1.8  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   9.8  
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po...    25   9.8  
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    25   9.8  

>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 33  MTLEEEATEKKVENQQKNPCKIALVENYDLVRV 131
           ++LEE  TEK  EN++K    +   E  DL  V
Sbjct: 8   VSLEEAITEKTSENRRKRDSDVLQTEEVDLSNV 40


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +3

Query: 66  VENQQKNPCKIALVENYDLVRVANQLRT*VI---IEYTFL 176
           +EN    PC  A VEN +   ++N++ +  +   ++Y FL
Sbjct: 412 IENHLWTPCGFAAVENLEKYTLSNRMESFFLSETLKYLFL 451


>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 179 LQKSVFNDYLSSQLIGDPN*IVVLDEGNFAW 87
           +  S+FND  SS  + D N +      N AW
Sbjct: 206 IANSLFNDTFSSLRLLDDNSVYTFSTKNIAW 236


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 420 ITNRCQTKRLRPQNVGYPVLS 358
           I+N+ Q   L+P+++GY VLS
Sbjct: 101 ISNKFQPHLLKPKSLGYRVLS 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,921,685
Number of Sequences: 5004
Number of extensions: 33638
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)