Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0394
         (551 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0483 + 19546295-19546397,19547163-19547482,19547606-195486...    27   7.5  
01_01_0888 + 6990354-6991862,6991970-6992431                           27   10.0 

>12_02_0483 +
           19546295-19546397,19547163-19547482,19547606-19548611,
           19549890-19549985,19550500-19551551
          Length = 858

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = -2

Query: 271 LINKNIK------LDLSFYNIINWVIYE*ERSKFRLHYRKVYSMI 155
           L+N+N +      +D SFYNIIN       RSKFRL +  ++S I
Sbjct: 277 LVNRNFESYITRIIDTSFYNIIN-DPKGITRSKFRLFHNVLFSKI 320


>01_01_0888 + 6990354-6991862,6991970-6992431
          Length = 656

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +3

Query: 48  EATEKKVENQQKNPCKIALVENY--DLVRVANQLRT*VII 161
           E  + +V ++Q +PC++ALVE     LVR  +Q    V++
Sbjct: 200 ELDKLRVHHEQPSPCRLALVEQLACTLVRSRSQRAAVVVV 239


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,968,276
Number of Sequences: 37544
Number of extensions: 168012
Number of successful extensions: 193
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)