Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0394
         (551 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical...    29   1.7  
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical...    29   1.7  
Z81047-5|CAB02832.3|  390|Caenorhabditis elegans Hypothetical pr...    27   6.8  
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    27   9.0  

>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
           protein C09E7.8b protein.
          Length = 1080

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 416 LIDVKQNV*DLKTWDIQSY 360
           +++VKQN  +LKTWD+  Y
Sbjct: 456 ILEVKQNADNLKTWDLMDY 474


>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
           protein C09E7.8a protein.
          Length = 1114

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 416 LIDVKQNV*DLKTWDIQSY 360
           +++VKQN  +LKTWD+  Y
Sbjct: 490 ILEVKQNADNLKTWDLMDY 508


>Z81047-5|CAB02832.3|  390|Caenorhabditis elegans Hypothetical
           protein C41G6.7 protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 134 QSTENLSNH*IHFSVM*PKLTTFLLVNYPVNYIVER*VK 250
           QST N++     +  M   L  FL V +P+NY++++ VK
Sbjct: 118 QSTFNITRRLSIWLAMVMALLRFLSVAFPMNYLIQKLVK 156


>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans homeobox
            protein 44,isoform a protein.
          Length = 1273

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = -2

Query: 259  NIKLDLSFYNIINWVIYE*ERSKFRLHYRKVYS 161
            ++KLD+S   + NW      RSK R    KVYS
Sbjct: 1137 SLKLDMSLRTVQNWFHNHRTRSKAREKEGKVYS 1169


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,441,236
Number of Sequences: 27780
Number of extensions: 180200
Number of successful extensions: 270
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)