Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0390
         (641 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.7  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosi...    27   8.6  
AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyros...    27   8.6  

>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 128  KRDSLYFIQSFIQVIN*RLMIMLPLYSQILQPFNKYISG 12
            K+D+L+ I S ++  N    I+     Q +QPFN Y+SG
Sbjct: 1912 KQDTLFLIDSSLKDSNVTFRILQQFAVQAVQPFN-YVSG 1949


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 128  KRDSLYFIQSFIQVIN*RLMIMLPLYSQILQPFNKYISG 12
            K+D+L+ I S ++  N    I+     Q +QPFN Y+SG
Sbjct: 1912 KQDTLFLIDSSLKDSNVTFRILQQFAVQAVQPFN-YVSG 1949


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 128  KRDSLYFIQSFIQVIN*RLMIMLPLYSQILQPFNKYISG 12
            K+D+L+ I S ++  N    I+     Q +QPFN Y+SG
Sbjct: 1912 KQDTLFLIDSSLKDSNVTFRILQQFAVQAVQPFN-YVSG 1949


>U53332-11|AAK31531.1|  668|Caenorhabditis elegans Protein tyrosine
           phosphatase protein2 protein.
          Length = 668

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 540 ILKDR-NQPGSHGLNSDHVRF**SNRSK 460
           IL DR N PGS  +N+ +VRF  S R+K
Sbjct: 310 ILTDRPNTPGSDYINASYVRFENSQRTK 337


>AF015882-1|AAC21678.1|  668|Caenorhabditis elegans protein tyrosine
           phosphatase protein.
          Length = 668

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/28 (53%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 540 ILKDR-NQPGSHGLNSDHVRF**SNRSK 460
           IL DR N PGS  +N+ +VRF  S R+K
Sbjct: 310 ILTDRPNTPGSDYINASYVRFENSQRTK 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,578,989
Number of Sequences: 27780
Number of extensions: 171749
Number of successful extensions: 216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)