Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0388
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    31   0.15 
SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr...    28   1.1  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.4  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   1.8  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    26   4.3  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    26   4.3  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    26   4.3  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    26   5.6  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   9.9  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +2

Query: 125 SKTTACSPLTGLTSSQRLRSVRCQY**STASSTLRAPPSAGTSAQV 262
           SKT++ + L GL    R  S+          STL APP+A TSAQ+
Sbjct: 617 SKTSSSTRLNGLGYHSRNTSIASDIDGVPKKSTLGAPPAAHTSAQM 662


>SPAC3H8.07c |||prefoldin subunit 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 169

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 306 QNVEFLHDIRAKAAAVYYEADEELKAKKHEDFSKNVY 416
           Q+V+FL + +  +  V YE ++ L AK   +   NVY
Sbjct: 65  QSVQFLKERQGDSFTVTYELNDTLNAKAEVEAKDNVY 101


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 601 CQDGLQDFLESRILHFQIRYLKHGLQVVKHAVNTKSPHVSFPAA 470
           C D +QD L++     + + L + LQ  K  +N K PH  +P A
Sbjct: 148 CYDSVQDQLDANDYEAKNQVLGYWLQKSKEQLNAKVPH-HYPKA 190


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -2

Query: 186 TERSLWLEVRPVSGEHAVVFEVLASVGEQHTAALPESLASEVM 58
           T R L    R ++   +V  EV ASV EQ T +LP    S  M
Sbjct: 774 TSRELASSDRNINTGTSVASEVSASVSEQSTVSLPREKMSVFM 816


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +3

Query: 219 VRSEHRHLQVPRRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEE 374
           V S HR  +   +K  L+ + +  +  +D N+  L+ ++  A++    +DE+
Sbjct: 36  VSSTHRQTRSQSKKPSLSSSAEPPSESLDDNISALNSLQRSASSSEKGSDED 87


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 495 DFVFTACLTT*RPCFKYLIWKCNILLSRKSC 587
           +F F  CL     CFK+L  K   L  RKSC
Sbjct: 285 EFTFNDCLNMFSKCFKFLKQK---LSDRKSC 312


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +3

Query: 207 RRQAVRSEHRHLQVPRRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEELKAK 386
           RR A   EH    VP +K       +EE  + D++      ++ +      EAD E KA 
Sbjct: 120 RRAANEGEHNE-SVPAKKVKKNTVKEEEIEKDDESATTETPVKEEPTGEETEADHEEKAS 178

Query: 387 -KHEDFS 404
             H +FS
Sbjct: 179 VDHGNFS 185


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 381 AKKHE-DFSKNVYPDMLKKLNSIVEANKGH 467
           AK  E DF +   PD + KLN +  +N+ H
Sbjct: 400 AKSQEFDFFEAKIPDSIAKLNELTASNENH 429


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 56  TITSLARLSGRAAVCCSPTEARTSKTTACSPLTGLTSSQRLRSVRCQY**STASSTLRAP 235
           T +SLA  S  +    +PT + TS + + +  +   +S  L S       ST S+T  + 
Sbjct: 155 TSSSLASSSTNSTTSATPTSSATSSSLSSTAASNSATSSSLASSSLN---STTSATATSS 211

Query: 236 PSAGTSA 256
             + T+A
Sbjct: 212 SLSSTAA 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,944
Number of Sequences: 5004
Number of extensions: 47321
Number of successful extensions: 148
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)