Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0388
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319 31 0.83
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 31 1.1
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110 31 1.1
09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193 29 2.5
07_01_0074 + 537041-537139,538307-538428,538525-538687 29 2.5
06_01_0786 - 5881178-5881303,5881523-5881627,5882078-5882169,588... 29 4.4
03_01_0249 - 1935355-1935827,1936129-1936330 29 4.4
02_05_1323 + 35700147-35701649 29 4.4
01_04_0021 - 15151645-15151809,15152184-15152343,15152548-151530... 29 4.4
09_04_0448 + 17692650-17692970,17693461-17693811 28 5.9
10_08_0272 - 16387422-16387427,16387428-16387526,16387688-163881... 28 7.7
07_03_1781 + 29468919-29468951,29469057-29469184,29469349-294694... 28 7.7
>01_04_0035 + 15326445-15326594,15326707-15326755,15326853-15327319
Length = 221
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +1
Query: 157 PDFKPKTPFGQMPVLVIDGKQYAQSTAICRYL 252
PD + PFGQ+P +S AICRY+
Sbjct: 44 PDHLARNPFGQVPAFQDGDLMLFESRAICRYI 75
>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
Length = 221
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = +1
Query: 115 GQDFE----DHRVLSADWPDFKPKTPFGQMPVLVIDGKQYAQSTAICRYLGASTGSPG 276
G DF+ D R + P F PFGQ+PVL + +S AI RY+ + G
Sbjct: 30 GLDFDLVPVDLRTAAHKQPHFLALNPFGQIPVLQDGDEVLYESRAINRYIATKYKAEG 87
>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
Length = 215
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 157 PDFKPKTPFGQMPVLVIDGKQYA-QSTAICRYL 252
PD + PFGQ+P L DG + +S AIC+Y+
Sbjct: 44 PDHLARNPFGQVPALQ-DGDLFLWESRAICKYV 75
>09_04_0115 - 14789499-14790288,14792055-14792441,14792820-14793193
Length = 516
Score = 29.5 bits (63), Expect = 2.5
Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 4/89 (4%)
Frame = +2
Query: 71 ARLSGRAAVCCSPTEARTSKTTACSPL----TGLTSSQRLRSVRCQY**STASSTLRAPP 238
A + RAA SPT A + T SP TG SS + AS + PP
Sbjct: 30 AAAASRAAPPASPTSAAAATTLGASPAAAPPTGPASSPAASPALQTSAAAAASLVVVEPP 89
Query: 239 SAGTSAQVXXXXXXXXXXXXXXPERGVPA 325
++ TSA PE +PA
Sbjct: 90 ASPTSAAATILGASPAPALPTSPETSIPA 118
>07_01_0074 + 537041-537139,538307-538428,538525-538687
Length = 127
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/74 (27%), Positives = 35/74 (47%)
Frame = +3
Query: 207 RRQAVRSEHRHLQVPRRKYGLAGANDEEAFEIDQNVEFLHDIRAKAAAVYYEADEELKAK 386
R ++S L+ RR + GA D+E V + +++AK E E++K
Sbjct: 5 RAVVMQSRGLLLRTRRRTFSTTGATDQEQVRRTNIVREIDELKAKVKREMIEDVEKVKRV 64
Query: 387 KHEDFSKNVYPDML 428
++ED +NV +L
Sbjct: 65 ENED--RNVLSRLL 76
>06_01_0786 -
5881178-5881303,5881523-5881627,5882078-5882169,
5882267-5882336,5882639-5882724,5882916-5883017,
5883375-5883597,5883693-5883758,5883896-5883986,
5884019-5884057,5885401-5885548,5885623-5885715,
5885782-5885886,5886645-5886826,5886912-5887084
Length = 566
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = -2
Query: 180 RSLWLEVRPVSGEHAVVFEVLASVGEQHTAALPESLA 70
R LW+E RP G AV+ + A G PE A
Sbjct: 46 RLLWVETRPEEGGRAVLVKEAAEPGGDAVDVTPEGFA 82
>03_01_0249 - 1935355-1935827,1936129-1936330
Length = 224
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +1
Query: 157 PDFKPKTPFGQMPVLVIDGKQYAQSTAICRYL 252
P F PFGQ+P +S AICRY+
Sbjct: 45 PSFLKLQPFGQVPAFKDSLTTVFESRAICRYI 76
>02_05_1323 + 35700147-35701649
Length = 500
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 8 SARRLTTIN*KCLRLCTITSLARLSGRAA 94
SARR+ +N C +C+ TSL GRAA
Sbjct: 140 SARRVFDVNVSCRDVCSWTSLLTAYGRAA 168
>01_04_0021 -
15151645-15151809,15152184-15152343,15152548-15153025,
15153243-15153291,15153585-15153734
Length = 333
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +1
Query: 157 PDFKPKTPFGQMPVLVIDGKQYAQSTAICRYL 252
P+ + PFG++PVL QS AI RY+
Sbjct: 44 PEHLARNPFGEIPVLEDGDLTLYQSRAIARYI 75
>09_04_0448 + 17692650-17692970,17693461-17693811
Length = 223
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 187 QMPVLVIDGKQYAQSTAICRYL 252
++PVLV DGK A+ST I Y+
Sbjct: 55 KVPVLVHDGKPLAESTVIVEYI 76
>10_08_0272 -
16387422-16387427,16387428-16387526,16387688-16388122,
16388408-16388738,16390821-16390961,16391668-16391736,
16392077-16392312
Length = 438
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 95 VCCSPTEARTSKTTACSP 148
+CC P + R +K ACSP
Sbjct: 102 LCCQPFQGRRAKLNACSP 119
>07_03_1781 +
29468919-29468951,29469057-29469184,29469349-29469433,
29469771-29469824,29470072-29470163,29470280-29470383,
29470811-29470886,29471231-29471678,29471874-29471916,
29471977-29472209,29472302-29472505,29472595-29472693,
29472789-29472861,29473373-29473500,29473614-29473836,
29473992-29474215,29474296-29474423,29475053-29475167,
29475603-29475658,29475795-29475888,29475966-29476152,
29476229-29476309,29476384-29476484,29476567-29476629,
29476800-29476907
Length = 1059
Score = 27.9 bits (59), Expect = 7.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 37 KMPKVVYHYFACKALGESGRMLLAYGGQDFEDHRVLS 147
++P +V H+ + A G L YGG D VL+
Sbjct: 304 RLPVIVLHWSSRSADSNKGGHLFVYGGDDMGSEEVLT 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,643,317
Number of Sequences: 37544
Number of extensions: 319902
Number of successful extensions: 1099
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1098
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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