Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0388
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.5  
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        22   4.6  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   4.6  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   8.0  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/32 (25%), Positives = 20/32 (62%)
 Frame = +2

Query: 503 VHSMFDYLKTMLQIPDLEVQYPAFKKVLQSVL 598
           V +++DY  + L++ ++ V  P F ++ + V+
Sbjct: 411 VENIWDYTPSSLELGEVAVHDPVFYQLYKKVM 442


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 521 SQTCCEHEITPCQLSGSNVTFVRFNYRV 438
           S T   HE+ P  L   +V  V  NYRV
Sbjct: 31  SGTSSFHEMRPDYLLPKDVVVVSSNYRV 58


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 485 QLSGSNVTFVRFNYRVQLLQHIR 417
           Q++G+N+T  + +   QL QH+R
Sbjct: 157 QMNGNNITNFKNSNIFQLKQHMR 179


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 157 PDFKPKTPFGQMPVLVIDGK 216
           P+ KP+TPF    +L ++ K
Sbjct: 8   PNRKPRTPFTTQQLLSLEKK 27


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,032
Number of Sequences: 438
Number of extensions: 2897
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)