Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0383
         (588 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56597| Best HMM Match : COesterase (HMM E-Value=0)                  29   2.1  
SB_6604| Best HMM Match : Extensin_2 (HMM E-Value=0.27)                27   8.6  
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    27   8.6  

>SB_56597| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 505

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 146 IYILIVFLVFSVCEGSLGLSILVSIIRSHGNDYFQ 250
           I I+I+ ++  + E  + LSI+++II    +DY Q
Sbjct: 462 IIIIIIIIIIIIIENVINLSIIINIIDVDVDDYLQ 496


>SB_6604| Best HMM Match : Extensin_2 (HMM E-Value=0.27)
          Length = 492

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/47 (38%), Positives = 21/47 (44%)
 Frame = +2

Query: 221 IRSHGNDYFQRLEYYNDKIFIYNNFYNSFMFYKKYILIGSNNIIFYN 361
           IR+H  D FQ    Y     +YNN YN+   Y      G NN   YN
Sbjct: 372 IRTHAKDNFQPPYQYGLNNNVYNNGYNNNNGYNSN---GYNNGYNYN 415


>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
 Frame = +2

Query: 146 IYILIVFLVFSVCEGSLGLSILVS-------IIRSHGNDYFQRLEYYNDKIFIYNNFYNS 304
           IY+L   + F    G +GL+I V+        +  + N  F  L +    +F++NN Y S
Sbjct: 769 IYLLTANIAFRDVTGDIGLAIFVNDGLHRAISVYKNSNGKFDMLNFVM-PLFLHNNTYTS 827

Query: 305 FMFY 316
              Y
Sbjct: 828 ISVY 831


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,844,701
Number of Sequences: 59808
Number of extensions: 62607
Number of successful extensions: 249
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1422302661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)