Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0383
         (588 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY084160-1|AAL89898.1|  264|Drosophila melanogaster RE36854p pro...    30   2.0  
AF145314-1|AAF08395.1|  264|Drosophila melanogaster 26S proteaso...    30   2.0  
AE014296-2760|AAF49445.1|  264|Drosophila melanogaster CG4157-PA...    30   2.0  

>AY084160-1|AAL89898.1|  264|Drosophila melanogaster RE36854p
           protein.
          Length = 264

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 194 LGLSILVSIIRSHGNDYFQRLEYYNDKIFIYNNFYNSFMFYKKYILIGSNNIIF 355
           LGL++L  +  +  +D+   LE  +  +  +N F    +  ++YI+ G  N IF
Sbjct: 107 LGLNLLYLLSGNRVSDFHTELELLSVDVIQHNQFIRPILALEQYIMEGRYNKIF 160


>AF145314-1|AAF08395.1|  264|Drosophila melanogaster 26S proteasome
           regulatory complexsubunit p30 protein.
          Length = 264

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 194 LGLSILVSIIRSHGNDYFQRLEYYNDKIFIYNNFYNSFMFYKKYILIGSNNIIF 355
           LGL++L  +  +  +D+   LE  +  +  +N F    +  ++YI+ G  N IF
Sbjct: 107 LGLNLLYLLSGNRVSDFHTELELLSVDVIQHNQFIRPILALEQYIMEGRYNKIF 160


>AE014296-2760|AAF49445.1|  264|Drosophila melanogaster CG4157-PA
           protein.
          Length = 264

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 194 LGLSILVSIIRSHGNDYFQRLEYYNDKIFIYNNFYNSFMFYKKYILIGSNNIIF 355
           LGL++L  +  +  +D+   LE  +  +  +N F    +  ++YI+ G  N IF
Sbjct: 107 LGLNLLYLLSGNRVSDFHTELELLSVDVIQHNQFIRPILALEQYIMEGRYNKIF 160


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,665,516
Number of Sequences: 53049
Number of extensions: 98114
Number of successful extensions: 282
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2358819486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)