Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0383
         (588 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    29   0.045
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    27   0.14 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    25   0.42 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.42 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   0.96 
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   3.9  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   3.9  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   3.9  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   3.9  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 28.7 bits (61), Expect = 0.045
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 263 YNDKIFIYNNFYNSFMFYKKYIL 331
           YN+K    NN YN  ++YK YI+
Sbjct: 100 YNNKYNYNNNNYNKKLYYKNYII 122


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +2

Query: 218 IIRSHGNDYFQRLEYYNDKIFIYN-NFYNSFMFYKKYIL 331
           II S  N+Y      YN+  + YN N YN  ++YK YI+
Sbjct: 314 IISSLSNNY-----NYNNNNYKYNYNNYNKKLYYKNYII 347


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 218 IIRSHGNDYFQRLEYYNDKIFIYNNFYNSFMFYKKYIL 331
           II S  N+Y  +   YN+    YNN YN  ++YK YI+
Sbjct: 81  IISSLSNNY--KYSNYNN----YNN-YNKKLYYKNYII 111


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +2

Query: 218 IIRSHGNDYFQRLEYYNDKIFIYNNF--YNSFMFYKKYIL 331
           II S  N+Y +   Y N   +  NN+  YN  ++YK YI+
Sbjct: 314 IISSLSNNY-KYSNYNNYNNYNNNNYNNYNKKLYYKNYII 352


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 266 NDKIFIYNNFYNSFMFYKKYILIGSNNI--IFYNI 364
           N K   YNN+ N++  Y  Y    +NN   ++YNI
Sbjct: 321 NYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNI 355



 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 227 SHGNDYFQRLEYYNDKIFIYNNFYNSFMFYKKYI 328
           S+ N+Y      YN+    YNN Y    +   YI
Sbjct: 325 SNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYI 358


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 230 HGNDYFQRLEYYN 268
           H N+ +++L+YYN
Sbjct: 313 HNNNNYKKLQYYN 325


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 230 HGNDYFQRLEYYN 268
           H N+ +++L+YYN
Sbjct: 324 HNNNNYKKLQYYN 336


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 230 HGNDYFQRLEYYN 268
           H N+ +++L+YYN
Sbjct: 324 HNNNNYKKLQYYN 336


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 230 HGNDYFQRLEYYN 268
           H N+ +++L+YYN
Sbjct: 313 HNNNNYKKLQYYN 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,962
Number of Sequences: 438
Number of extensions: 1317
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)