Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0378
         (329 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    24   0.36 
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   1.1  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    21   3.3  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   4.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          20   5.8  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    20   5.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    20   5.8  
EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    20   7.7  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    20   7.7  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   7.7  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 24.2 bits (50), Expect = 0.36
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 252 SPRPSVATGLAPSTGKRPRSRRTWTG 175
           +P P+   G  P     PRS+R +TG
Sbjct: 262 APSPTAGAGGLPPQVPSPRSQRRYTG 287



 Score = 23.4 bits (48), Expect = 0.63
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 229 GPGTLYGKTAPFKTHL 182
           G G +YGKT+  K HL
Sbjct: 321 GCGKVYGKTSHLKAHL 336


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 20/77 (25%), Positives = 26/77 (33%)
 Frame = -2

Query: 277 QPDSKERPLAATLRRYGPGTLYGKTAPFKTHLDRSRRDEKAEPPEHHISRYRLKQRDSVL 98
           QP +   P    L  YG G  Y   A  K     S    KA   EH  + Y  K    +L
Sbjct: 61  QPTTGYYPYDPALAAYGYGAGYDLAARRKNATRESTATLKAWLNEHKKNPYPTKGEKIML 120

Query: 97  GYIPVRSPLLRKSWLVS 47
             I   +     +W  +
Sbjct: 121 AIITKMTLTQVSTWFAN 137



 Score = 20.2 bits (40), Expect = 5.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 64  SLVAASEQEYSPALNPVVLIDNG 132
           S+   S   YSP  NP  L D G
Sbjct: 24  SIGVESSAFYSPLSNPYALKDAG 46


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.0 bits (42), Expect = 3.3
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -3

Query: 219 PSTGKRPRSRR 187
           PS+G+ PR+RR
Sbjct: 203 PSSGRSPRTRR 213


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 20.6 bits (41), Expect = 4.4
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 183 WTGVVATRKRNLP 145
           WTG V  RK+  P
Sbjct: 237 WTGQVTVRKKRKP 249


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 217 LYGKTAPFKTHLDRSRRDEKAEPPEHHISRYRLKQ 113
           L G +AP + HL + R    A  PE   S  + K+
Sbjct: 182 LQGISAPVEAHLRKGRGAIGAYGPEKSASIPKKKE 216


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 131 PLSIKTTGFSAGLYS 87
           P+S++ TGFS   YS
Sbjct: 20  PVSVEPTGFSPKGYS 34


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.2 bits (40), Expect = 5.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 271 DSKERPLAATLRRYGP 224
           D+KERP +   R Y P
Sbjct: 205 DAKERPDSIYQREYSP 220


>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 262 ERPLAATLRRYG 227
           E P   T+RRYG
Sbjct: 583 ESPCCITMRRYG 594


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 6/21 (28%), Positives = 15/21 (71%)
 Frame = -3

Query: 312 GVYHPLRAALSSNPTLRSVLS 250
           G+Y  ++    +NP+L+++L+
Sbjct: 146 GLYERIQKLKKANPSLKTLLA 166


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.8 bits (39), Expect = 7.7
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +1

Query: 121 IDNGRCGVREVPLSRRDDSCPS 186
           + N RC  RE   S     CPS
Sbjct: 79  LPNSRCNSRESSDSLVQPRCPS 100


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,972
Number of Sequences: 336
Number of extensions: 1526
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  6367260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)