Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0378
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    27   0.97 
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    25   2.2  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   3.9  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    24   5.2  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    24   6.8  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    23   9.0  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    23   9.0  
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ...    23   9.0  

>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 0.97
 Identities = 18/78 (23%), Positives = 35/78 (44%)
 Frame = -3

Query: 324 LALDGVYHPLRAALSSNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLP 145
           +A +G     R A +    ++  L P+ +++  +  +  K+P+S +     V   K  LP
Sbjct: 198 VATNGGLIAFRKATAHQSAMKEFLKPKDTLSVMITDT--KQPKSTKKLVQGVFELKERLP 255

Query: 144 NTTSPVID*NNGIQCWAI 91
                +ID  +GI   A+
Sbjct: 256 TVIDSIIDAIDGISKSAV 273


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 25.4 bits (53), Expect = 2.2
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = -3

Query: 234 ATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPV 127
           A G+AP T K P   R +  +       LP T   V
Sbjct: 40  AVGVAPDTAKYPNGARWYKQIATYDLATLPGTAKEV 75


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -1

Query: 203 GPVQDALGQXXXXXXXXXXXTPHLPLSIKTTGFSAGLYSCSLA 75
           G +++ L Q            PH+PLS +   F+   ++C++A
Sbjct: 2   GELKEILKQRYHELLDWNVKAPHVPLSQRLKHFTWSWFACTMA 44


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 159 KRNLPNTTSPVID*NNGIQCW 97
           +RN P+  +P+ D  N  Q W
Sbjct: 638 RRNAPDINNPIADFQNSFQNW 658


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 252  SPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNT 139
            +P PS A      +G  P +   + G+  T   N P+T
Sbjct: 1016 TPAPSSAFAFGNQSGTNPAAPAGFGGITNTATNNPPST 1053


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 285 LSSNPTLRSVLSPRPSVATGLAPSTGKRPRSRR 187
           +SSNP  ++ +SPR S A     S  K P S+R
Sbjct: 287 VSSNPAKKTRVSPRRSTAA----SKKKSPSSKR 315


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 260 ASSRRDPPSLRAWHPLRENGP 198
           +S  R+P S RA  P R+N P
Sbjct: 165 SSVSRNPASSRAGSPTRDNAP 185


>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 103 VLGYIPVRSPLLRKSWLVSFPPLTNMLKFG 14
           +LGY P ++P  R+    ++  + N + FG
Sbjct: 218 LLGYFPKKTPSYREITTPAYSKIDNYIWFG 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,343,164
Number of Sequences: 5004
Number of extensions: 25583
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)