Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0378
(329 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0362 + 28739969-28740232,28740336-28740452,28740560-287406... 33 0.054
06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554 31 0.29
04_04_0974 + 29831274-29833184 30 0.38
04_03_0486 + 16463144-16463216,16464058-16464105,16464415-164644... 29 1.2
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701... 28 1.5
10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998 28 2.0
03_05_0862 + 28353235-28354431 27 2.7
02_05_0189 + 26590489-26591529 27 2.7
12_01_0129 - 974295-974720,975721-975876 27 4.7
11_04_0301 + 16142236-16142945,16143748-16144247,16144557-161446... 27 4.7
03_06_0085 + 31542601-31542855 27 4.7
11_06_0164 + 20833525-20834685,20835053-20835124,20836302-208363... 26 6.2
07_03_0066 - 13011785-13011998,13012570-13012730,13013396-130134... 26 6.2
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450... 26 6.2
03_05_0902 + 28643395-28643708,28643830-28643921,28644342-286444... 26 6.2
03_02_0910 + 12317493-12317960,12319678-12319734,12320592-123206... 26 6.2
01_01_0316 + 2565704-2566134,2566682-2566845,2566989-2567152,256... 26 6.2
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 26 8.3
07_03_0797 + 21575948-21576042,21576140-21576902,21577134-215773... 26 8.3
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389... 26 8.3
05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821... 26 8.3
04_03_0200 - 12570414-12570712,12572704-12573007 26 8.3
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 26 8.3
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 26 8.3
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 26 8.3
>01_06_0362 +
28739969-28740232,28740336-28740452,28740560-28740660,
28741251-28741322,28741433-28741514,28741607-28741687,
28742548-28742589,28743009-28743047,28743278-28743343,
28743444-28743590,28743638-28743652
Length = 341
Score = 33.1 bits (72), Expect = 0.054
Identities = 15/35 (42%), Positives = 24/35 (68%)
Frame = +1
Query: 64 SLVAASEQEYSPALNPVVLIDNGRCGVREVPLSRR 168
S V +E+ Y+P+++PV+L D R G + V L+RR
Sbjct: 185 SFVDKTEKRYNPSMSPVILKDKWRKGSQWVALTRR 219
>06_03_1378 + 29705711-29706725,29707139-29707363,29707445-29707554
Length = 449
Score = 30.7 bits (66), Expect = 0.29
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -3
Query: 303 HPLRAALSSNPTLRSVLSPRPSVATGLAPSTGKRP 199
HP+ A SS+P L P PSVAT +A P
Sbjct: 31 HPIFGAASSSPIAHRSLLPTPSVATAVAVQVDPPP 65
>04_04_0974 + 29831274-29833184
Length = 636
Score = 30.3 bits (65), Expect = 0.38
Identities = 22/73 (30%), Positives = 34/73 (46%)
Frame = +1
Query: 43 EKKLTRISLVAASEQEYSPALNPVVLIDNGRCGVREVPLSRRDDSCPSAS*TGPFSRRGC 222
E++ R +A SE+E + VL+ NG C +R PL +C G ++RG
Sbjct: 188 EEESRRSKQLAVSEEETVREMFDKVLLCNGECELR-APLPAEARNC-GVYVKGSGNKRGR 245
Query: 223 QARSDGGSRREDA 261
+ G S +DA
Sbjct: 246 KKGKSGASAEDDA 258
>04_03_0486 +
16463144-16463216,16464058-16464105,16464415-16464467,
16465429-16465494,16465705-16465779,16466333-16466407,
16467538-16467608,16467698-16467749,16468461-16468550,
16469359-16469451,16469590-16469697
Length = 267
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Frame = -3
Query: 267 LRSVLSPRPSVATGLAPSTGKRPRSR-RTWTGV-VATRKRNLP 145
LRS+ PR ++T + +TGK +S RT +G+ V++ +R LP
Sbjct: 85 LRSIARPRLQISTVVDVATGKGVKSNVRTSSGMFVSSEERKLP 127
>06_03_1511 -
30669292-30669401,30669894-30669930,30670012-30670107,
30670186-30670281,30670679-30670828,30670956-30671100,
30671178-30671251,30671325-30671445,30671697-30671821,
30671898-30672047,30672249-30672324,30672496-30672557,
30672597-30672839,30673354-30673683,30673776-30673932,
30674008-30674139,30674219-30674277,30674734-30674798,
30674878-30675094,30675413-30675499,30675655-30675750,
30675938-30676003,30676096-30676287,30676380-30676532,
30676812-30677052,30677322-30677515,30678212-30678348,
30678474-30678480,30678708-30678830,30679370-30679427,
30680018-30680090,30680493-30681765
Length = 1714
Score = 28.3 bits (60), Expect = 1.5
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = -2
Query: 313 WSLPPA*G-CTLKQPDSKERPLAATLRRYGPGTLYGKTAPFKTHLDRSRRDEKAEP 149
WS PPA CTL P +K +P+ L R P ++ L R R +K +P
Sbjct: 57 WSPPPALDVCTLSFP-TKRQPIHRLLARLAPADPDTFLLDYRRFLHRHRGRKKPKP 111
>10_08_0732 - 20173816-20174137,20175824-20176023,20176099-20176998
Length = 473
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -3
Query: 267 LRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVA 166
+ L RPSV G A +T + P SRR GV A
Sbjct: 94 ISDTLYTRPSVLAGAASATTRSPSSRRGGGGVRA 127
>03_05_0862 + 28353235-28354431
Length = 398
Score = 27.5 bits (58), Expect = 2.7
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +2
Query: 158 FLVATTPVQVRLERGRFPVEGARPVATEGRGE 253
FLV + P RG VE RPVA G GE
Sbjct: 262 FLVESPPGSAGGRRGLMQVELLRPVAASGGGE 293
>02_05_0189 + 26590489-26591529
Length = 346
Score = 27.5 bits (58), Expect = 2.7
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -3
Query: 303 HPLRAALSSNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVI 124
HP L T SP PS T LA G+R R + V + ++ T+P +
Sbjct: 7 HPSSNLLLPTTTALPNPSPNPSRVTPLASGRGRRGHHRVCASSVAPAQPASVAQPTAPAL 66
>12_01_0129 - 974295-974720,975721-975876
Length = 193
Score = 26.6 bits (56), Expect = 4.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 160 SRRDDSCPSAS*TGPFSRRGCQARSDGG 243
S R P+ S G F RR C+ R+ GG
Sbjct: 106 SDRTGHVPAFSIEGSFKRRSCKIRNSGG 133
>11_04_0301 +
16142236-16142945,16143748-16144247,16144557-16144649,
16144879-16145005,16145265-16145468,16145587-16145692
Length = 579
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -2
Query: 148 PEHHI---SRYRLKQRDSVLGYIPVRSPLLRKSWLVSFPPLTNM 26
PEHH R + V+G+ P P+L+++ ++ LTN+
Sbjct: 22 PEHHAVYSGRIVTLNKSGVVGHRPAPPPVLQEAQILDVDDLTNL 65
>03_06_0085 + 31542601-31542855
Length = 84
Score = 26.6 bits (56), Expect = 4.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 208 SRRGCQARSDGGSRRED 258
S+RGC ARSD G + D
Sbjct: 29 SKRGCTARSDDGQNKPD 45
>11_06_0164 +
20833525-20834685,20835053-20835124,20836302-20836328,
20836419-20836496,20837005-20837046
Length = 459
Score = 26.2 bits (55), Expect = 6.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 176 PVQVRLERGRFPVEGARPVATEGRGE 253
P +V + + R P EGA VA G G+
Sbjct: 19 PARVAMHKRRLPAEGALSVARVGAGD 44
>07_03_0066 -
13011785-13011998,13012570-13012730,13013396-13013464,
13014228-13014449
Length = 221
Score = 26.2 bits (55), Expect = 6.2
Identities = 17/50 (34%), Positives = 21/50 (42%)
Frame = -3
Query: 327 YLALDGVYHPLRAALSSNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWT 178
Y D + LRA + +NP LSP P+ T P T P WT
Sbjct: 14 YHCHDFEWEDLRAEVEANPAFSYHLSPFPT--TVGTPETPPPPPPSEAWT 61
>05_04_0254 -
19444409-19444621,19444724-19444887,19444974-19445087,
19446086-19446395
Length = 266
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -3
Query: 309 VYHP-LRAALSSNPTLRSVLSPRPSV 235
V HP L A LSS+PTL VL+ P V
Sbjct: 78 VLHPTLNATLSSSPTLALVLAVLPFV 103
>03_05_0902 +
28643395-28643708,28643830-28643921,28644342-28644443,
28645135-28645185,28645267-28645328,28645664-28645754,
28645911-28645975,28646053-28646247,28646346-28646465,
28646630-28646700,28646839-28647064,28647474-28647524,
28647629-28647857,28648140-28648279,28648527-28648652
Length = 644
Score = 26.2 bits (55), Expect = 6.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -3
Query: 318 LDGVYHPLRAALSSNPTLRSVLSPRPSVATGLAPSTGKRP 199
LD PLR A +P R V+ R GL S +RP
Sbjct: 68 LDMALTPLRFAFVMHPEFREVVGAREHSGEGLPASWIRRP 107
>03_02_0910 +
12317493-12317960,12319678-12319734,12320592-12320666,
12321219-12321299,12321472-12321546,12321818-12321862,
12321975-12322064,12322153-12322254,12322366-12322420,
12324966-12325027,12325521-12325555,12325877-12326115,
12326219-12328035
Length = 1066
Score = 26.2 bits (55), Expect = 6.2
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = -2
Query: 226 PGTLYGKTAPFKTHLDRSRRDEKAEPPEHH---ISRYRLKQR 110
P T Y A H+ R R + PP HH +S R ++R
Sbjct: 754 PLTAYHPAAKHSGHVSRLSRSGQVPPPPHHHRELSSLRYRRR 795
>01_01_0316 +
2565704-2566134,2566682-2566845,2566989-2567152,
2567594-2567720,2568347-2568450
Length = 329
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +2
Query: 128 TGDVVFGRFRFLVATTPVQVRLERGRFPVEGARPVATEGRGERTLLRVGLLESAALS 298
TGD + G A+ + E GRF + + G TLL++G LE++ ++
Sbjct: 101 TGDAIGGDVGEGAASQGCWLEPELGRFAFQSYKENPLIGPSSATLLKMGALETSKVT 157
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -3
Query: 300 PLRAALSSNPTLRSVLSPRPSVATGLAPSTGK 205
P A+ +S P R+ SP PS + G AP T K
Sbjct: 8 PAPASSASKPRRRA--SPSPSPSPGTAPKTAK 37
>07_03_0797 +
21575948-21576042,21576140-21576902,21577134-21577327,
21577667-21577700,21578421-21578485,21579032-21579524
Length = 547
Score = 25.8 bits (54), Expect = 8.3
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = -3
Query: 300 PLRAALSSNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPN-TTSP 130
P L S P + + + RP + AP+ RPR+ T A +P+ T+P
Sbjct: 21 PSELPLPSAPGVSARPADRPVASQAAAPAASARPRAPATSAAAAAAAAAAVPSFLTNP 78
>06_03_0157 +
17337641-17337896,17337975-17338082,17338643-17338908,
17339933-17340021,17340095-17340198,17340403-17340508,
17340600-17340675,17340772-17340883,17341719-17342250,
17343097-17343131,17343924-17343984,17344054-17344132,
17344266-17344349
Length = 635
Score = 25.8 bits (54), Expect = 8.3
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +2
Query: 176 PVQVRLERGRFPVEGARPVATEGRGERTLLRVGLLESAALS----GW*TPSKAK 325
PV + ++ + P E R V G R L VGL SAA++ W PS K
Sbjct: 68 PVPEQQQQQKQPAERGREVGIGIAGSRRALAVGLGASAAIALVGMMWHLPSSRK 121
>05_04_0347 +
20479682-20479753,20480136-20480813,20481143-20482195,
20482345-20482406,20482491-20482541,20482635-20482719,
20483253-20483342,20483472-20483563,20483704-20483728
Length = 735
Score = 25.8 bits (54), Expect = 8.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -3
Query: 273 PTLRSVLSPRPSVATGLAPSTG-KRPRSRRTWTGVVATRKRNLPNT 139
P R + PS+AT + PST +RP S++ V + P+T
Sbjct: 393 PITRGMAPMHPSIATPVRPSTAERRPTSKQMAQKHVGMATPSRPST 438
>04_03_0200 - 12570414-12570712,12572704-12573007
Length = 200
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 246 RPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 151
RPS G+A S+G + RS + W T K N
Sbjct: 115 RPSCNAGIASSSGGKKRS-KAWEDFDITEKEN 145
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -3
Query: 249 PRPSVATGLAPSTGKRPRSR 190
PRP VA L P + K PR+R
Sbjct: 80 PRPPVAVPLKPESPKPPRAR 99
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 282 SSNPTLRSVLSPRPSVATGLAPSTGKRPRSR 190
SS+P S SP PS A+ + S +R RSR
Sbjct: 28 SSDPDPDSASSPSPSSASSPSRSPDRRSRSR 58
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 25.8 bits (54), Expect = 8.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 76 PLLRKSWLVSFPPLTNMLK 20
P RK WL+ + P++NM++
Sbjct: 930 PASRKPWLMGWQPISNMIR 948
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,089,314
Number of Sequences: 37544
Number of extensions: 214196
Number of successful extensions: 721
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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