Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0378
(329 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical... 29 0.60
Z81520-3|CAB04222.1| 214|Caenorhabditis elegans Hypothetical pr... 29 1.0
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 28 1.4
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 28 1.4
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 28 1.4
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 28 1.8
AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho... 28 1.8
Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical pr... 27 2.4
Z81112-3|CAB03273.1| 656|Caenorhabditis elegans Hypothetical pr... 27 3.2
Z81113-6|CAD21647.2| 295|Caenorhabditis elegans Hypothetical pr... 27 4.2
U58761-7|AAB00717.1| 481|Caenorhabditis elegans Hypothetical pr... 27 4.2
AL023828-28|CAI46623.1| 117|Caenorhabditis elegans Hypothetical... 27 4.2
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 26 5.5
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 26 5.5
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ... 26 5.5
Z47810-7|CAH10843.1| 538|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z47810-6|CAB76718.1| 504|Caenorhabditis elegans Hypothetical pr... 25 9.7
U52003-2|AAY43981.1| 554|Caenorhabditis elegans Hypothetical pr... 25 9.7
U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical pr... 25 9.7
AL031264-3|CAH04705.1| 538|Caenorhabditis elegans Hypothetical ... 25 9.7
AL031264-2|CAB76735.1| 504|Caenorhabditis elegans Hypothetical ... 25 9.7
>AC084159-10|AAK39362.1| 310|Caenorhabditis elegans Hypothetical
protein Y73B3A.5 protein.
Length = 310
Score = 29.5 bits (63), Expect = 0.60
Identities = 22/65 (33%), Positives = 31/65 (47%)
Frame = -3
Query: 324 LALDGVYHPLRAALSSNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLP 145
L+L G P ++S+ SV SP SVA+ PST R RKR+L
Sbjct: 112 LSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESR------QCRKRSLS 165
Query: 144 NTTSP 130
++T+P
Sbjct: 166 SSTTP 170
>Z81520-3|CAB04222.1| 214|Caenorhabditis elegans Hypothetical
protein F31B9.3 protein.
Length = 214
Score = 28.7 bits (61), Expect = 1.0
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Frame = -2
Query: 322 SLRWSLPPA*GCTLKQPDSKERPLAATLRRYGPG-TLYGKTAPF--KTHLDRSRRDEKAE 152
S+ LP + PD + P+ +++Y PG + Y + +T L R DE+
Sbjct: 92 SIEEMLPQCVDMYVDFPDGQRMPVDEFVKQYAPGPSFYNRLCNMVAETELMREYNDEERR 151
Query: 151 PPE--HHISRYRLKQRDSVL 98
E H SR + K+R +L
Sbjct: 152 KYEENEHKSRMQKKERKELL 171
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 28.3 bits (60), Expect = 1.4
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 324 LALDGVYHPLRAALSSNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNL- 148
L+L G P ++S+ SV SP SVA+ PST R RKR+L
Sbjct: 207 LSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESR------QCRKRSLS 260
Query: 147 PNTTS 133
P+TTS
Sbjct: 261 PSTTS 265
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 28.3 bits (60), Expect = 1.4
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 324 LALDGVYHPLRAALSSNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNL- 148
L+L G P ++S+ SV SP SVA+ PST R RKR+L
Sbjct: 207 LSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESR------QCRKRSLS 260
Query: 147 PNTTS 133
P+TTS
Sbjct: 261 PSTTS 265
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 28.3 bits (60), Expect = 1.4
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 324 LALDGVYHPLRAALSSNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNL- 148
L+L G P ++S+ SV SP SVA+ PST R RKR+L
Sbjct: 207 LSLLGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESR------QCRKRSLS 260
Query: 147 PNTTS 133
P+TTS
Sbjct: 261 PSTTS 265
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 27.9 bits (59), Expect = 1.8
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = -3
Query: 282 SSNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSP 130
+ PT R + R + T AP+T + +R T T + T + P+ T+P
Sbjct: 267 TQRPTTRRATTKRITTTTTAAPTTPRLTTARAT-TPLATTSRPTTPSPTTP 316
>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever
shorter telomeres) homologprotein 1, isoform c protein.
Length = 1027
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/62 (25%), Positives = 22/62 (35%)
Frame = -2
Query: 292 GCTLKQPDSKERPLAATLRRYGPGTLYGKTAPFKTHLDRSRRDEKAEPPEHHISRYRLKQ 113
G ++P R ++ Y P LY +T RRD E RYR +
Sbjct: 186 GAIARRPQGSRRQRNDSINSYNPRVLYQRTRGANDENHPKRRDAAVEKKPKEPRRYRGEH 245
Query: 112 RD 107
D
Sbjct: 246 DD 247
>Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical
protein R04F11.3 protein.
Length = 385
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 327 YLALDG--VYHPLRAALSSNPTLRSVLSPRPSVATGLAPSTGKRPR 196
Y+ DG V ++ A+ +P S P+P V T AP T K P+
Sbjct: 328 YVDEDGYLVSKAVQKAVECSPQKASPEKPKPKVITAPAPGTKKAPK 373
>Z81112-3|CAB03273.1| 656|Caenorhabditis elegans Hypothetical
protein T02B5.3 protein.
Length = 656
Score = 27.1 bits (57), Expect = 3.2
Identities = 8/17 (47%), Positives = 15/17 (88%)
Frame = -3
Query: 207 KRPRSRRTWTGVVATRK 157
++PR ++TW+GV+ T+K
Sbjct: 64 RKPRPQKTWSGVLETKK 80
>Z81113-6|CAD21647.2| 295|Caenorhabditis elegans Hypothetical
protein T03F6.6 protein.
Length = 295
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -3
Query: 150 LPNTTSPVID*NNGIQC--WAIFLFARRY*GNPG*FLFLRLLICL 22
+PN +D NN I C ++IF F F+F+ LLI L
Sbjct: 184 VPNDQGSALDANNNINCLPFSIFKFLNSKFNMKTCFIFMLLLIAL 228
>U58761-7|AAB00717.1| 481|Caenorhabditis elegans Hypothetical
protein C01F1.1 protein.
Length = 481
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 316 RWSLPPA*GCTLKQPDSKERPLAA-TLRRYGPGTLYGKTAPFKTHLDRSRRDEK 158
+W++ G T+++ D++ L+ T++ YG G+ YGK A + + R K
Sbjct: 44 KWTIDS--GVTMEREDNQRVILSTQTVQEYGEGSEYGKAAREEARRKKYGRQSK 95
>AL023828-28|CAI46623.1| 117|Caenorhabditis elegans Hypothetical
protein Y17G7B.24 protein.
Length = 117
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -2
Query: 280 KQPDSKERPLAATLRRYGPGTLYGKTAPFKTHL 182
+ P P + +RR P TLY K +P +H+
Sbjct: 5 RSPPEHSPPCSPLIRRQRPATLYVKHSPRASHV 37
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 291 AALSSNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTT 136
A + PT+ +P+P+ + AP + K P +RR+ AT + N+T
Sbjct: 46 AKTPARPTVAKP-APKPTPKSAPAPKSPKSPPARRSIPRAAATAANSTINST 96
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3
Query: 291 AALSSNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTT 136
A + PT+ +P+P+ + AP + K P +RR+ AT + N+T
Sbjct: 46 AKTPARPTVAKP-APKPTPKSAPAPKSPKSPPARRSIPRAAATAANSTINST 96
>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
protein M01E10.2 protein.
Length = 1286
Score = 26.2 bits (55), Expect = 5.5
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 273 PTLRSVLSPRPSVATGLAPSTGKRPRSRRTW---TGVVATRKRNLPNTTSPVI 124
PT+++ + T ST + PR+++TW T T ++ P T +P I
Sbjct: 369 PTIQTPPPTTQTPPTTQTSSTTQTPRTKQTWAPWTPPTTTTRQTPPTTQAPPI 421
>Z47810-7|CAH10843.1| 538|Caenorhabditis elegans Hypothetical
protein F45E10.2b protein.
Length = 538
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 157 AEPPEHHISRYRLKQRDSVLGYIPVRSPLLRKSWLVSFP--PLTNMLKFG 14
AE E + K++DS + +R+P +RK + +F P+T M+ +G
Sbjct: 316 AEKIEKKMDVTATKKKDSFGVFDLIRTPQMRKRTIANFVMWPVTTMMYYG 365
>Z47810-6|CAB76718.1| 504|Caenorhabditis elegans Hypothetical
protein F45E10.2a protein.
Length = 504
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 157 AEPPEHHISRYRLKQRDSVLGYIPVRSPLLRKSWLVSFP--PLTNMLKFG 14
AE E + K++DS + +R+P +RK + +F P+T M+ +G
Sbjct: 282 AEKIEKKMDVTATKKKDSFGVFDLIRTPQMRKRTIANFVMWPVTTMMYYG 331
>U52003-2|AAY43981.1| 554|Caenorhabditis elegans Hypothetical
protein ZK381.8 protein.
Length = 554
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 79 SEQEYSPALNPVVLIDNGRCGVREVPLS 162
SE E P L P +LID R R++P+S
Sbjct: 77 SESEPEPPLKPGLLIDPTRRLTRKLPVS 104
>U23147-1|AAC46692.2| 674|Caenorhabditis elegans Hypothetical
protein C18H9.8 protein.
Length = 674
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -3
Query: 261 SVLSPRPSVATGLAPSTGKRPRS 193
S S RP +TG APS RP S
Sbjct: 55 STASSRPRTSTGRAPSARARPPS 77
>AL031264-3|CAH04705.1| 538|Caenorhabditis elegans Hypothetical
protein F45E10.2b protein.
Length = 538
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 157 AEPPEHHISRYRLKQRDSVLGYIPVRSPLLRKSWLVSFP--PLTNMLKFG 14
AE E + K++DS + +R+P +RK + +F P+T M+ +G
Sbjct: 316 AEKIEKKMDVTATKKKDSFGVFDLIRTPQMRKRTIANFVMWPVTTMMYYG 365
>AL031264-2|CAB76735.1| 504|Caenorhabditis elegans Hypothetical
protein F45E10.2a protein.
Length = 504
Score = 25.4 bits (53), Expect = 9.7
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 157 AEPPEHHISRYRLKQRDSVLGYIPVRSPLLRKSWLVSFP--PLTNMLKFG 14
AE E + K++DS + +R+P +RK + +F P+T M+ +G
Sbjct: 282 AEKIEKKMDVTATKKKDSFGVFDLIRTPQMRKRTIANFVMWPVTTMMYYG 331
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,628,768
Number of Sequences: 27780
Number of extensions: 153250
Number of successful extensions: 482
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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