Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0378
(329 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g08880.1 68417.m01464 Ulp1 protease family protein contains P... 29 0.75
At1g03457.2 68414.m00327 RNA-binding protein, putative similar t... 29 1.00
At1g03457.1 68414.m00326 RNA-binding protein, putative similar t... 29 1.00
At3g24390.1 68416.m03063 Ulp1 protease family protein contains P... 28 1.3
At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi do... 28 1.3
At5g14550.2 68418.m01706 expressed protein contains Pfam profile... 28 1.7
At5g14550.1 68418.m01705 expressed protein contains Pfam profile... 28 1.7
At4g03300.1 68417.m00451 Ulp1 protease family protein contains P... 28 1.7
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 1.7
At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identica... 27 2.3
At3g42730.1 68416.m04462 Ulp1 protease family protein contains P... 27 2.3
At5g36860.1 68418.m04416 Ulp1 protease family protein contains P... 27 3.0
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to... 27 3.0
At2g14770.1 68415.m01668 Ulp1 protease family protein similar to... 27 3.0
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P... 27 3.0
At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containi... 27 3.0
At3g59620.1 68416.m06652 hypothetical protein 27 4.0
At1g27780.1 68414.m03399 Ulp1 protease family protein similar to... 27 4.0
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat... 26 5.3
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 26 5.3
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 26 7.0
At2g34640.1 68415.m04255 expressed protein 26 7.0
At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containi... 26 7.0
At4g21850.2 68417.m03160 methionine sulfoxide reductase domain-c... 25 9.3
At4g21850.1 68417.m03159 methionine sulfoxide reductase domain-c... 25 9.3
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 25 9.3
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 25 9.3
At3g47750.1 68416.m05202 ABC transporter family protein probable... 25 9.3
At1g26330.1 68414.m03211 hypothetical protein 25 9.3
At1g23130.1 68414.m02891 Bet v I allergen family protein similar... 25 9.3
>At4g08880.1 68417.m01464 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At1g34730, At1g27790, At1g34740, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1463
Score = 29.1 bits (62), Expect = 0.75
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = -3
Query: 270 TLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 121
T+ S S P + AP TGK+P R + G TRK + S +D
Sbjct: 370 TIPSHDSREPPTSMDKAPVTGKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 419
>At1g03457.2 68414.m00327 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 438
Score = 28.7 bits (61), Expect = 1.00
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -2
Query: 319 LRWSLPPA*GCTLKQPDSKERPLAATLRRYGPGTLYGKTAPF---KTHLDRSRRDEKAEP 149
LR SL + GC + +SKE+ +AA G + G P ++ R+ +
Sbjct: 141 LRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQARRLLK 200
Query: 148 PEHHISRYRLKQRDSVLGYIPV 83
+ H+SR Q S+ G +P+
Sbjct: 201 VQSHVSRLD-PQNPSMFGALPM 221
>At1g03457.1 68414.m00326 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 429
Score = 28.7 bits (61), Expect = 1.00
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Frame = -2
Query: 319 LRWSLPPA*GCTLKQPDSKERPLAATLRRYGPGTLYGKTAPF---KTHLDRSRRDEKAEP 149
LR SL + GC + +SKE+ +AA G + G P ++ R+ +
Sbjct: 132 LRGSLQTSKGCLFLKYESKEQAVAAMEALNGRHIMEGANVPLIVKWADTEKERQARRLLK 191
Query: 148 PEHHISRYRLKQRDSVLGYIPV 83
+ H+SR Q S+ G +P+
Sbjct: 192 VQSHVSRLD-PQNPSMFGALPM 212
>At3g24390.1 68416.m03063 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At4g05280,
At1g25886, At4g03300
Length = 1139
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Frame = -3
Query: 315 DGVYHPLRAALSSN-----PTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 151
D V +RAAL T+ S S P ++ AP T K+P R + G TRK +
Sbjct: 486 DFVRDQIRAALDPKGKRPEQTIPSHDSREPPISMDKAPVTAKKPSRRMSTKGSTGTRKSS 545
Query: 150 LPNTTSPVID 121
S +D
Sbjct: 546 RLTRVSHDVD 555
>At1g31280.1 68414.m03828 PAZ domain-containing protein / piwi
domain-containing protein similar to SP|O04379 Argonaute
protein (AGO1) {Arabidopsis thaliana}, SP|Q9XGW1 PINHEAD
protein (ZWILLE protein) {Arabidopsis thaliana};
contains Pfam profiles PF02171: Piwi domain, PF02170:
PAZ domain
Length = 1013
Score = 28.3 bits (60), Expect = 1.3
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -3
Query: 279 SNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNL 148
S P V++ +PSV +A S K P R GVVA R+ NL
Sbjct: 136 SEPVRAEVMNLKPSVQ--VATSDRKEPMKRPDRGGVVAVRRVNL 177
>At5g14550.2 68418.m01706 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 346
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 64 SLVAASEQEYSPALNPVVLIDNGRCGVREVPLSRR 168
S + Y+P +NP++ + N R G + V L+R+
Sbjct: 183 SFADTKDSRYNPRMNPIIPVRNWRKGSQWVVLNRK 217
>At5g14550.1 68418.m01705 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 377
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 64 SLVAASEQEYSPALNPVVLIDNGRCGVREVPLSRR 168
S + Y+P +NP++ + N R G + V L+R+
Sbjct: 183 SFADTKDSRYNPRMNPIIPVRNWRKGSQWVVLNRK 217
>At4g03300.1 68417.m00451 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790 , At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886
Length = 1285
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/59 (28%), Positives = 25/59 (42%)
Frame = -3
Query: 297 LRAALSSNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 121
+R T+ S S +P + AP T K+P R + G TRK + S +D
Sbjct: 593 MRLCKRPEQTIPSHDSRKPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 651
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = -3
Query: 315 DGVYHPLRAALSSN-----PTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 151
D V +RAAL T+ S S P + AP T K+P R + G TRK +
Sbjct: 486 DFVRDQIRAALDPKGKRPEQTIHSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSS 545
Query: 150 LPNTTSPVID 121
S +D
Sbjct: 546 RLTRVSHDVD 555
>At5g37020.1 68418.m04440 auxin-responsive factor (ARF8) identical
to auxin response factor 8 GI:4104931 from [Arabidopsis
thaliana]
Length = 811
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 131 PLSIKTTGFSAGLYSCSLAATKEIL 57
P+S+ +GF LYSC T E+L
Sbjct: 668 PMSLTDSGFQNSLYSCMQDTTHELL 692
>At3g42730.1 68416.m04462 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1314
Score = 27.5 bits (58), Expect = 2.3
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = -3
Query: 315 DGVYHPLRAALSSN-----PTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 151
D V +RAAL T+ S S P + AP T K+P R + G TRK +
Sbjct: 484 DFVREQIRAALDPKGKRPKQTIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSS 543
Query: 150 LPNTTSPVID 121
S +D
Sbjct: 544 RLTRVSHDVD 553
>At5g36860.1 68418.m04416 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1204
Score = 27.1 bits (57), Expect = 3.0
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = -3
Query: 315 DGVYHPLRAALSSN-----PTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 151
D V +RAAL T+ S S P + AP T K+P R + G TRK +
Sbjct: 486 DFVRDQIRAALDPKGKRPEQTIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSS 545
Query: 150 LPNTTSPVID 121
S +D
Sbjct: 546 RLTRVSHDVD 555
>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1158
Score = 27.1 bits (57), Expect = 3.0
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = -3
Query: 315 DGVYHPLRAALSSN-----PTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 151
D V +RAAL T+ S S P + AP T K+P R + G TRK +
Sbjct: 486 DFVRDQIRAALDPKGKRPEQTIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSS 545
Query: 150 LPNTTSPVID 121
S +D
Sbjct: 546 RLTRVSHDVD 555
>At2g14770.1 68415.m01668 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1139
Score = 27.1 bits (57), Expect = 3.0
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = -3
Query: 315 DGVYHPLRAALSSN-----PTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 151
D V +RAAL T+ S S P + AP T K+P R + G TRK +
Sbjct: 486 DFVRDQIRAALDPKGKRPEQTIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSS 545
Query: 150 LPNTTSPVID 121
S +D
Sbjct: 546 RLTRVSHDVD 555
>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1383
Score = 27.1 bits (57), Expect = 3.0
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
Frame = -3
Query: 315 DGVYHPLRAALSSN-----PTLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRN 151
D V +RAAL T+ S S P + AP T K+P R + G TRK +
Sbjct: 466 DFVRDQIRAALDPKGKRPEQTIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSS 525
Query: 150 LPNTTSPVID 121
S +D
Sbjct: 526 RLTRVSHDVD 535
>At1g10270.1 68414.m01157 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat;
similar to ESTs gb|R30192 and gb|AA651017
Length = 913
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = -3
Query: 318 LDGVYHPLRAALSSNPTLRSVLSPRPSVATGLAPSTGKRPRSRRTWT--GVV 169
L+ V P+R A S T PR G P+ ++PR R WT GVV
Sbjct: 599 LNSVARPVRNAGQSGNT-----PPRVPAVFGTTPAAPQQPRDRAPWTSQGVV 645
>At3g59620.1 68416.m06652 hypothetical protein
Length = 120
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = +2
Query: 170 TTPVQVRLERGRFPVEGAR 226
T P Q E GR PVEGAR
Sbjct: 62 TEPFQFDREHGRVPVEGAR 80
>At1g27780.1 68414.m03399 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At5g36850, At3g42730, At1g52020,
At3g24390, At4g05280, At1g25886, At4g03300; contains
Pfam profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1468
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -3
Query: 270 TLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 121
T+ S S P + AP T K+P R + G TRK + S +D
Sbjct: 504 TIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTGTRKSSRLTRVSHDVD 553
>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
bHLH127 transcription factor
Length = 880
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -3
Query: 306 YHPLRAALSSNPTLRSVLSPRPSVATGLAPSTGKRPRS 193
+HPLR + S +P P + LAP K P S
Sbjct: 747 HHPLRQDYLCSELYASTPAPHPQSSVSLAPPPPKPPSS 784
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -3
Query: 270 TLRSVLSPRPSVATGLAPSTGKRPRSRRTWTGVVATRKRNLPNTTSPVID 121
T+ S S P + AP T K+P R + G TRK + S +D
Sbjct: 452 TIPSHDSREPPTSMDKAPVTAKKPSRRMSTKGSTETRKSSRLTRVSHDVD 501
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Frame = -2
Query: 271 DSKERPLAATLRRYGP--GTLYGKTAPFKTHLDRSRRDEKAEPPEHHISRY 125
D KER RYG G + G ++ DRSR+ K P HH Y
Sbjct: 276 DRKERARGME-DRYGDNKGEVSGSKRSKRSEEDRSRKRHKHLPSHHHRRSY 325
>At2g34640.1 68415.m04255 expressed protein
Length = 527
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 267 LRSVLSPRPSVATGLAPSTGKRPRSRR 187
+R+ +P+P+ + PS GK P SRR
Sbjct: 122 VRAARAPQPAGESSSFPSYGKNPGSRR 148
>At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 408
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/47 (29%), Positives = 27/47 (57%)
Frame = +3
Query: 45 KETNQDFLSSGERTGI*PSTESRCFNR*REMWCSGGSAFSSRRLLSK 185
KE + ++ + GI P E+ +NR +++C GSA SS ++++
Sbjct: 168 KEAKRVYIEMPKMYGIEPDLET--YNRMIKVFCESGSASSSYSIVAE 212
>At4g21850.2 68417.m03160 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 121
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 243 PSVATGLAPSTGKRPRSRRTWTGVVA 166
P+ AT +APSTG + + W +++
Sbjct: 2 PTSATAVAPSTGSVQKKDQDWRAILS 27
>At4g21850.1 68417.m03159 methionine sulfoxide reductase
domain-containing protein / SeIR domain-containing
protein low similarity to pilin-like transcription
factor [Homo sapiens] GI:5059062, SP|P14930 Peptide
methionine sulfoxide reductase msrA/msrB (EC 1.8.4.6)
{Neisseria gonorrhoeae}; contains Pfam profile PF01641:
SelR domain
Length = 143
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 243 PSVATGLAPSTGKRPRSRRTWTGVVA 166
P+ AT +APSTG + + W +++
Sbjct: 2 PTSATAVAPSTGSVQKKDQDWRAILS 27
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = -2
Query: 319 LRWSLPPA*GCTLKQPDSKERPLAATLRRYGPGTLYGKTAPFK---THLDRSRRDEKAEP 149
LR + + GC + ++KE+ ++A G + G T P +R R + +
Sbjct: 138 LRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQK 197
Query: 148 PEHHISR 128
+ HI+R
Sbjct: 198 AQSHIAR 204
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Frame = -2
Query: 319 LRWSLPPA*GCTLKQPDSKERPLAATLRRYGPGTLYGKTAPFK---THLDRSRRDEKAEP 149
LR + + GC + ++KE+ ++A G + G T P +R R + +
Sbjct: 138 LRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGSTVPLVVKWADTERERHTRRLQK 197
Query: 148 PEHHISR 128
+ HI+R
Sbjct: 198 AQSHIAR 204
>At3g47750.1 68416.m05202 ABC transporter family protein probable
transport protein ABC-C, Homo sapiens, PIR2:S71363
Length = 944
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -3
Query: 243 PSVATGLAPSTGKRPRSRRT-WTGVVATRK 157
P V PSTG P SRR+ WT + +K
Sbjct: 779 PKVVYMDEPSTGLDPASRRSLWTAIKGAKK 808
>At1g26330.1 68414.m03211 hypothetical protein
Length = 1196
Score = 25.4 bits (53), Expect = 9.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -1
Query: 242 PPSLRAWHPLRENGPVQD 189
P SL AWHP+ + ++D
Sbjct: 1034 PTSLFAWHPVHSHSTIED 1051
>At1g23130.1 68414.m02891 Bet v I allergen family protein similar to
Csf-2 [Cucumis sativus][GI:5762258][J Am Soc Hortic Sci
124, 136-139 (1999)]; location of ESTs gb|T45139 and
gb|T43456 ; contains Pfam profile PF00407:
Pathogenesis-related protein Bet v I family
Length = 160
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 253 LAATLRRYGPGTLYGKTAPFKTHLDRSRRDEKAEPPE 143
+ AT + GPG++ K HL R DEK PPE
Sbjct: 109 IQATPKLRGPGSVV------KCHLKYERIDEKVAPPE 139
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,455,721
Number of Sequences: 28952
Number of extensions: 149785
Number of successful extensions: 444
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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