Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0364
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    26   1.8  
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom...    26   2.4  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    25   5.5  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   5.5  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    24   7.3  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    24   7.3  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    24   9.7  

>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
 Frame = -2

Query: 305 PLRALSEHNDLCNLQYSNQWNVNY-LKLLLLVSHVFEYLK------FHY*SIVTMRNV 153
           P+ +L EH DL    Y +  NV+Y LKL    S + E  K      FH+ S+ + RN+
Sbjct: 275 PISSLKEHPDLKPTLYIHDVNVSYMLKLKASRSLLSEIKKEKSVFPFHFGSLSSERNL 332


>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 225 VTACFSCI*IFKVPLLKYCYDEKCVL 148
           V AC  C+  +K P+ +YC D +  L
Sbjct: 280 VPACIYCLREWKKPICRYCIDLRSCL 305


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = -2

Query: 329 VKEYCEXXPLRALSEHNDLCNLQYSNQWNVNYLKLLLLVSHVFEYLKF 186
           V+++C   P ++  +H      +Y   W V+ L L +++  VF+ ++F
Sbjct: 830 VQDHCYRKP-QSYEDHYQDIRTRYVLVWAVSNLILAIVLIQVFDGMRF 876


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 305 PLRALSEHNDLCNLQYSNQWNVNYLKLLLL 216
           PL++   H   C L +S + N NYL ++ L
Sbjct: 35  PLKSHRTHGHYCLLNFSLRENKNYLIIVYL 64


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 117 HCILCIISTLHNIFIVTILQ*W 52
           HC+LC+ S  H++   T+   W
Sbjct: 906 HCVLCLQSASHSLMKKTVEGNW 927


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
 Frame = -1

Query: 372 LNCHLHYIILCISL------GKGVLRVXASTRPLGTQRPLQPAIFQSMECKL 235
           +NC L  +  C  L      G+G+L+   +  PLGT   +  A F  ++  L
Sbjct: 83  MNCVLQCLFACKDLTIPMLQGRGLLQNINTKNPLGTGGKITSAFFSLLQSVL 134


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -1

Query: 240 KLFKTVTACFSCI 202
           KL+KT T CF+C+
Sbjct: 146 KLWKTFTDCFNCL 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,853
Number of Sequences: 5004
Number of extensions: 28624
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)