Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0364
         (393 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0729 + 27203481-27203488,27203529-27203611,27204075-272041...    29   1.8  
01_01_0763 + 5898719-5899021,5899124-5899518,5899619-5899703,589...    26   9.4  

>03_05_0729 +
           27203481-27203488,27203529-27203611,27204075-27204190,
           27204298-27204330,27205196-27205402,27205532-27205600,
           27206096-27206192,27206289-27206407
          Length = 243

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -1

Query: 192 KVPLLKYCYDEKCVLRV*PLP*DIEHCILCIISTLHNIFIVTILQ*WNFKYS 37
           KV  + Y Y E+   R  PL  D ++C  C+ S   ++    +++ WN  +S
Sbjct: 69  KVATIFYSYREQIEARGLPLTPDQKYCFRCLHSVQLHLIQKLLMELWNNDWS 120


>01_01_0763 +
           5898719-5899021,5899124-5899518,5899619-5899703,
           5899810-5900032,5900131-5900327,5900531-5900601,
           5904034-5904218,5905914-5906068,5906241-5907632,
           5907973-5908269
          Length = 1100

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 393 RIIVQLPLNCHLHYIILCISLGKGVLRVXASTRPLGTQRPLQ 268
           R+I +LP +    YII   +    VL V    R  G ++PL+
Sbjct: 646 RVIAELPADSFGAYIISMATAPSDVLAVELLQRECGVKKPLR 687


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,056,572
Number of Sequences: 37544
Number of extensions: 153368
Number of successful extensions: 265
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)