Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0364
         (393 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1077| Best HMM Match : rve (HMM E-Value=2.1e-17)                    27   5.4  
SB_47512| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_29623| Best HMM Match : GM_CSF (HMM E-Value=5)                      27   5.4  
SB_28931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_44371| Best HMM Match : 7tm_1 (HMM E-Value=0.011)                   27   7.2  
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)               26   9.5  
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)                    26   9.5  

>SB_1077| Best HMM Match : rve (HMM E-Value=2.1e-17)
          Length = 794

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 140 YTLRTHFSS*QYFSNGTLNIQIHEKQAVTVLNNL 241
           YT+  H  + Q+FSN  ++ Q+ E Q  T   +L
Sbjct: 152 YTVDAHLKACQFFSNQIVSSQMEEPQGSTSAQHL 185


>SB_47512| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 384 VQLPLNCHLHYIILCISLGKGVLRVXASTRPLGTQRPL 271
           V +P N HL  I+ C +   G+  V +   P GT+RP+
Sbjct: 37  VLVPYNPHLPIILDCDASAYGLGAVLSHQIPDGTERPI 74


>SB_29623| Best HMM Match : GM_CSF (HMM E-Value=5)
          Length = 296

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 384 VQLPLNCHLHYIILCISLGKGVLRVXASTRPLGTQRPL 271
           V +P N HL  I+ C +   G+  V +   P GT+RP+
Sbjct: 127 VLVPYNPHLPIILDCDASAYGLGAVLSHQIPDGTERPI 164


>SB_28931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1035

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 140 YTLRTHFSS*QYFSNGTLNIQIHEKQAVTVLNNL 241
           YT+  H  + Q+FSN  ++ Q+ E Q  T   +L
Sbjct: 326 YTVDAHLKACQFFSNQIVSSQMEEPQGSTSAQHL 359


>SB_44371| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
          Length = 350

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 259 YCRLQRSLCSERARRGXHSQYSF 327
           YC L +  C+ER RR  H+  SF
Sbjct: 27  YCTLIKPYCTERCRRIVHALSSF 49


>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 918

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 378 LPLNCHLHYIILCISLGKGVLRVXASTRPLGTQRPL 271
           +P N HL  I+ C +   G+  V +   P GT+RP+
Sbjct: 543 VPYNPHLPIILDCDASAYGLGAVLSHQIPDGTERPI 578


>SB_10648| Best HMM Match : 7TM-7TMR_HD (HMM E-Value=3.4)
          Length = 272

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/34 (26%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 8   TVHCLFSHVFEYLKFHY*-SIVTIKILCNVLIMH 106
           ++ C+   V  YL + Y  S++++  +C+++I+H
Sbjct: 13  SLSCICHIVIVYLSYRYRASVISLSCICHIVIVH 46



 Score = 26.2 bits (55), Expect = 9.5
 Identities = 9/34 (26%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 8   TVHCLFSHVFEYLKFHY*-SIVTIKILCNVLIMH 106
           ++ C+   V  YL + Y  S++++  +C+++I+H
Sbjct: 167 SLSCICHIVIVYLSYRYRVSVISLSCICHIVIVH 200


>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
          Length = 837

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 378 LPLNCHLHYIILCISLGKGVLRVXASTRPLGTQRPL 271
           +P N HL  I+ C +   G+  V +   P GT+RP+
Sbjct: 366 VPYNPHLPIILDCDASAYGLGAVLSHQIPDGTERPI 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,186,469
Number of Sequences: 59808
Number of extensions: 198653
Number of successful extensions: 292
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)