Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0364
         (393 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containi...    27   6.0  
At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger) fa...    26   7.9  
At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2 [...    26   7.9  

>At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 427

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -2

Query: 173 IVTMRNVF*ECSPCLRT*NIVYYALLAR 90
           +VT +N+  EC P +RT +I++ ALL R
Sbjct: 218 MVTSKNL--ECRPTIRTYHILFKALLGR 243


>At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 235

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -1

Query: 390 IIVQLPLNCHLHY---IILCISLGKGVLRVXASTRPLGTQRPLQPAIFQSMECKLFKTVT 220
           +IV L ++ HL+Y   ++      +        T P  T   L P+I +S+    F  VT
Sbjct: 10  LIVILMVSLHLYYRWYLLRSSPFNRTTAASTFFTDPSSTPGGLNPSIIKSLPIFTFSAVT 69

Query: 219 ACFS 208
           A F+
Sbjct: 70  ALFA 73


>At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2
           [Lycopersicon esculentum] GI:5420276; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 461

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 324 LYLTIYIILCNVNGNSVEAARL 389
           LYLT+Y+I   ++GN VE  RL
Sbjct: 252 LYLTVYLIDWFLHGNYVERQRL 273


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,667,213
Number of Sequences: 28952
Number of extensions: 134945
Number of successful extensions: 232
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 567552648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)