Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0362
         (427 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   1.2  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          27   1.2  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    27   1.6  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    24   8.6  

>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 20  NDGSKQEKSEFRLCYYPHKLSTFTSMLDEA 109
           N GSK  + E     Y HKL  FT +L+++
Sbjct: 787 NKGSKMAELEKEFNQYKHKLDEFTPILEKS 816


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 71  HKLSTFTSMLDEAFDNRARHHIYGDFQPLDKV 166
           H+ ST   + DEA +N    H + + +PL+K+
Sbjct: 141 HESSTSKDLTDEASENTIITHSHPESEPLEKI 172


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -1

Query: 250 WKYGSFSDANYCLIFSLLHDVY--VEGRDGDLVQRLE 146
           WK+  FS+   C++ S   +V+  ++   GD++ RLE
Sbjct: 210 WKHMEFSNDGKCILLSTRANVHYILDAFSGDVLSRLE 246


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 383 SITAKEKSKSKLFPISLKSKEFKID 309
           ++  KEK K K+  ISL  K+  +D
Sbjct: 351 AMAKKEKKKKKVLSISLSGKKVVVD 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,654,518
Number of Sequences: 5004
Number of extensions: 31157
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)