Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0362
         (427 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0667 - 19834793-19834911,19836216-19836345                       29   1.6  
04_04_1499 - 34006999-34007232,34007371-34007440,34007580-340076...    29   2.1  
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704...    28   2.7  
05_05_0138 + 22644263-22644460,22644617-22644711,22645786-226459...    28   2.7  
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286...    27   4.8  
08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729           27   8.3  
08_01_0393 + 3458359-3458492,3459069-3459157,3459918-3459958           27   8.3  

>08_02_0667 - 19834793-19834911,19836216-19836345
          Length = 82

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 182 RRQGRGPCPAAGSLRRCGAGLGC 114
           R  GRGP P+  S   C A LGC
Sbjct: 38  RSDGRGPIPSGKSTMACTAHLGC 60


>04_04_1499 -
           34006999-34007232,34007371-34007440,34007580-34007637,
           34007940-34007979,34008183-34008259,34008366-34008582,
           34008703-34009266
          Length = 419

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 70  TQAINIHE-HAGRGIRQPSPAPHLRRLPAA 156
           T+ I +H+ H G  +  PSPAPHL    AA
Sbjct: 3   TKKIKLHDCHFGSPLCDPSPAPHLLSSAAA 32


>10_03_0012 -
           7037088-7037282,7037453-7037954,7038079-7038081,
           7040633-7041213
          Length = 426

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 52  PSMLLPTQAINIHEHAGRGIRQ-PSPAPHLRRLPAAGQGPRPCLL 183
           PSM  P  A   H H G G  Q P P P  + + AAG+ P P +L
Sbjct: 78  PSMPGPLPAPYDHHHRGGGPAQPPPPPPPPQPIHAAGEFP-PAML 121


>05_05_0138 +
           22644263-22644460,22644617-22644711,22645786-22645949,
           22646725-22646970,22647600-22647944,22648516-22648586,
           22648676-22648794,22650508-22650637,22650806-22650857,
           22650974-22651136,22651244-22651418,22651772-22651942,
           22652275-22652388,22652559-22652609
          Length = 697

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 15  LQTMGANRKRVSSVYATTHTSYQHSRACWTR 107
           L   G   K+ SS+Y    +SYQ S+A W+R
Sbjct: 666 LNNAGYITKKGSSMYQVVTSSYQGSQATWSR 696


>01_01_0365 -
           2859617-2859722,2860047-2860489,2862232-2862391,
           2863431-2863516,2863648-2866272
          Length = 1139

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 283 YFKLNKFSLKCWKYGSFSDANYCLIFSLLHDVYVEGRDGDLV 158
           Y  LN FSL    YG F +  +   + L  ++ V G   DLV
Sbjct: 578 YAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVRGVKLDLV 619


>08_01_0820 - 7957563-7957646,7958036-7958134,7958233-7959729
          Length = 559

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +2

Query: 2   YCIDTSNDGSKQEKSEFRLCY-YPHKLSTFTSMLDEAFDNRARHHIYG 142
           Y  D+  D  +QE  E  +CY  P  L  F S+ ++ +     +  +G
Sbjct: 442 YAFDSHLDNFRQEIQELLVCYSCPVPLGNFKSLYEQRYKKTLIYESFG 489


>08_01_0393 + 3458359-3458492,3459069-3459157,3459918-3459958
          Length = 87

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/28 (53%), Positives = 16/28 (57%)
 Frame = +1

Query: 82  NIHEHAGRGIRQPSPAPHLRRLPAAGQG 165
           N HEH  R   QPS +   RRL AAG G
Sbjct: 5   NEHEHEQRR-PQPSESTRCRRLTAAGGG 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,408,644
Number of Sequences: 37544
Number of extensions: 212222
Number of successful extensions: 648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)