Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0362
         (427 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)            64   6e-11
SB_20701| Best HMM Match : DUF1027 (HMM E-Value=2.4)                   29   2.1  
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)                  28   3.7  
SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)               27   4.9  
SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)              27   6.5  
SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)               27   6.5  
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.6  

>SB_6783| Best HMM Match : Porphobil_deamC (HMM E-Value=5.8)
          Length = 382

 Score = 63.7 bits (148), Expect = 6e-11
 Identities = 24/52 (46%), Positives = 38/52 (73%)
 Frame = +2

Query: 44  SEFRLCYYPHKLSTFTSMLDEAFDNRARHHIYGDFQPLDKVPVPAFYIHVMQ 199
           S+FRL Y PH+L+ F+++L + F   A H  +GDF+PL K+  PA+Y+H++Q
Sbjct: 318 SKFRLSYCPHRLANFSNLLKDIFGKNAEHITFGDFKPLGKIENPAYYVHLIQ 369


>SB_20701| Best HMM Match : DUF1027 (HMM E-Value=2.4)
          Length = 229

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 11  DTSNDGSKQEKSEFRLCYYPHKLSTFTSMLDEAFDNRAR 127
           DT+   + +  +   LCYYP  +   TS ++ A +++ R
Sbjct: 52  DTNQPSTNRRSNRRGLCYYPKDVLMMTSGMERAVEHKKR 90


>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
          Length = 1799

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +1

Query: 31   QTGKE*VPSMLLPTQAINIHEHAGRGIRQPSPAPHLRRLPAAGQGPRPCLLHTRHAED-- 204
            Q G++ V  M +P +       +G   R+P+ AP    LP   + PRP  L  +   +  
Sbjct: 1699 QDGEQRVTKMEIPVKG------SGEQARKPNQAPRKTHLPENNRVPRPRRLSKKEMRELN 1752

Query: 205  *KLNNNL 225
             KL NNL
Sbjct: 1753 QKLYNNL 1759


>SB_33149| Best HMM Match : DSL (HMM E-Value=5.60519e-45)
          Length = 443

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -2

Query: 192 TCM*KAGTGTLSSGWKSP*MWCRARLSNASSSMLVN 85
           TC  + G+ T  SGW  P   CR RL +AS+    N
Sbjct: 136 TCDSQTGSKTCLSGWSGPECDCRPRL-DASAGYTCN 170


>SB_53461| Best HMM Match : Amelogenin (HMM E-Value=0.099)
          Length = 2489

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 377 TAKEKSKSKLFPISLKSKEFKIDVDLNR 294
           T+ EK ++ + P ++K ++FKID D NR
Sbjct: 634 TSYEK-QATISPFNVKEQDFKIDADSNR 660


>SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)
          Length = 270

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 13 YFKRWEQTGKE*VPSM 60
          YFKRW+QTGK  V  +
Sbjct: 21 YFKRWKQTGKSSVSKL 36


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 97  AGRGIRQPSPAPHLRRLPAAGQGPRPCLLHT 189
           +G    QP+  P LRRL   G GPRP + H+
Sbjct: 303 SGNRNTQPTRRP-LRRLGTTGYGPRPGVGHS 332


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,087,484
Number of Sequences: 59808
Number of extensions: 225592
Number of successful extensions: 495
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)