Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0362
         (427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ...    27   5.3  
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont...    27   7.0  
At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein ...    26   9.3  
At1g04360.1 68414.m00426 zinc finger (C3HC4-type RING finger) fa...    26   9.3  

>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
           YT521-B-like family protein low similarity to cleavage
           and polyadenylation specificity factor 30 kDa subunit
           [Bos taurus] GI:2327052; contains Pfam profiles PF00642:
           Zinc finger C-x8-C-x5-C-x3-H type (and similar),
           PF04146: YT521-B-like family; supporting cDNA
           gi|24415581|gb|AY140901.1|
          Length = 678

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +1

Query: 49  VPSMLLPTQAINIHEHAGRGIRQPSPAPHLRRLPAAGQGPRP 174
           VP M+ P +      H G G+      PH+  +  A +G RP
Sbjct: 561 VPGMMFPGRPPQQFPHGGYGMMGGGRGPHMGGMGNAPRGGRP 602


>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related contains
            weak similarity to Swiss-Prot:Q9NZW4 dentin
            sialophosphoprotein precursor [Homo sapiens]
          Length = 1501

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 71   VGSSIDGTHSFPVCSH 24
            VGSS+DGTHS  +  H
Sbjct: 1224 VGSSVDGTHSVQLSQH 1239


>At5g42640.1 68418.m05191 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 300

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 65  YPHKLSTFTSMLDEAFDNRARHHIYGDFQPLDKVPVP 175
           +PH+ S     LD  F +   +H++ D + L K+  P
Sbjct: 169 FPHQDSADRQHLDIIFSSSKHNHVFQDGRSLKKISEP 205


>At1g04360.1 68414.m00426 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 381

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 74  KLSTFTSMLDEAFDNRARHHIYGDFQPL 157
           K    TSM DE  D R +   +G+ QP+
Sbjct: 280 KFHKVTSMGDECIDTRGKDGHFGEIQPI 307


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,479,432
Number of Sequences: 28952
Number of extensions: 163885
Number of successful extensions: 370
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)