Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0358
         (724 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XNT1 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_Q5C196 Cluster: SJCHGC04405 protein; n=1; Schistosoma j...    33   5.4  
UniRef50_Q4UFA2 Cluster: CPSF (Cleavage and polyadenylation spec...    33   5.4  

>UniRef50_Q4XNT1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 404

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 576 IIMGVIIWPELSIYPLYKFVLMLNVVNKQS*LMILFVICNLTIYKLLY 433
           IIM   IW    + PL+K +L  +++   S  +IL + CNL  Y  +Y
Sbjct: 104 IIMSQEIWRHEFLNPLHKLLLSPSIIRLSS-FIILLIFCNLHCYYYMY 150


>UniRef50_Q5C196 Cluster: SJCHGC04405 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC04405 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 281

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +2

Query: 611 ISLKLLEKILIWINIKSKRAL*KIIRYCC*DRYSQISL 724
           I LKLL+ IL+W+N+ S   L  I   C  +RY  + L
Sbjct: 102 IGLKLLKNILLWVNLLSTETLKHITLTCLINRYLLVGL 139


>UniRef50_Q4UFA2 Cluster: CPSF (Cleavage and polyadenylation
           specific factor), subunit A, putative; n=2;
           Theileria|Rep: CPSF (Cleavage and polyadenylation
           specific factor), subunit A, putative - Theileria
           annulata
          Length = 1641

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +1

Query: 550 RPNYDSHNNGKHRSMXYIFSNFIKIVRK---NLDLD*YQE*KSFIENYQVLLLG*VLTDF 720
           R N +   N K++S   I SN+IK+  K   NL+ +   +  SFI+NY   +LG + T++
Sbjct: 241 RRNSNEQENEKYKSPYLILSNYIKMDLKEKFNLNKNSLVKAISFIDNYHTPILGVLTTNY 300


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 622,869,874
Number of Sequences: 1657284
Number of extensions: 12420532
Number of successful extensions: 27797
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27697
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)