Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0358
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    29   0.51 
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    26   6.3  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   6.3  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    25   8.3  

>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -3

Query: 431 SVCCLVALICTMSIGVTRLMSISLSKYTLYSIGVHCTFVLYVYDG 297
           SV  ++ + CT  I   +    SLS    Y   +HC + +   DG
Sbjct: 211 SVAGIITVYCTQPIDTVKSRMQSLSASKEYKNSIHCAYKILTQDG 255


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 33  VIKYENVGYNINVIIYPVLINLVMLY*QLIILTSIQ*SCCF 155
           +IKY+ + Y  N+  +P +  L     +  + TSI  SC F
Sbjct: 120 IIKYDGLSYLWNITKFPWMDKLAASSSRFSLSTSITHSCVF 160


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 311 TRQMYNVHQLNTKYIYLKILTSIWSHLCSLYKSGLLNNKPT 433
           ++++ +VH  N + +  K+ T+   H C    SG +  K T
Sbjct: 19  SKELISVHNPNPEPVIFKVKTTAPKHYCVRPNSGKIEPKST 59


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 461 QMTNNIMSYDCLLTTFNISTNLYK 532
           ++   +MSYD +LTT+N+    +K
Sbjct: 482 KIAEQLMSYDIVLTTYNVIAYEFK 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,199
Number of Sequences: 5004
Number of extensions: 58776
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)