Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0358
         (724 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06)                  30   2.2  
SB_18510| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_21865| Best HMM Match : DUF1010 (HMM E-Value=1.5)                   29   3.8  
SB_19963| Best HMM Match : His_leader (HMM E-Value=9.3)                28   6.7  
SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_4580| Best HMM Match : Pirin (HMM E-Value=4.1e-06)
          Length = 336

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = -3

Query: 437 SMSVCCLVALICTMSIGVTRL----MSISLSKYTLYSIGVHCT 321
           S SVC L A +CT+S GV  L     ++S S  TLY+ GV CT
Sbjct: 91  SASVCTLSASVCTLSAGVCTLSAGVCTLSASVCTLYA-GV-CT 131



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = -3

Query: 437 SMSVCCLVALICTMSIGVTRL----MSISLSKYTLYSIGVHCT 321
           S SVC L A +CT+S GV  L     ++S+  +TL S GV CT
Sbjct: 119 SASVCTLYAGVCTLSAGVCTLSAGVCTLSVGVFTL-SAGV-CT 159


>SB_18510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 18  NRNNNVIKYENVGYNINVIIYPVLINLVMLY 110
           N N N++KYENV + + +II    INL M Y
Sbjct: 395 NSNMNLVKYENVSFTMLLII----INLFMCY 421


>SB_21865| Best HMM Match : DUF1010 (HMM E-Value=1.5)
          Length = 359

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/46 (28%), Positives = 27/46 (58%)
 Frame = -3

Query: 434 MSVCCLVALICTMSIGVTRLMSISLSKYTLYSIGVHCTFVLYVYDG 297
           MSV  +   + ++S+    LMS+ +   +L S+ ++C+   +V+DG
Sbjct: 269 MSVGLMSVGLMSVSLMSVGLMSVGVMSVSLMSVSLNCSSTPFVFDG 314


>SB_19963| Best HMM Match : His_leader (HMM E-Value=9.3)
          Length = 101

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 242 AFHICFHTEASISLSYGYHHHIH 310
           AF +C HTE    +    HHH+H
Sbjct: 61  AFTVCIHTENQNQVYIVKHHHLH 83


>SB_41386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = +3

Query: 165 TISYQIHSVSVYLKRL*NKTKRQHLLRSTFVFIPKLV 275
           TISY++   S    RL +K K    LRST V IP+++
Sbjct: 271 TISYKVPGSSARSSRLDDKRKNTFFLRSTCV-IPEMI 306


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,143,761
Number of Sequences: 59808
Number of extensions: 381369
Number of successful extensions: 1553
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)