Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0358
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical...    30   1.9  
Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical pr...    29   4.4  
EF495354-1|ABP48104.1|  162|Caenorhabditis elegans LON-8 protein.      29   4.4  
Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z82287-2|CAB05312.1|  502|Caenorhabditis elegans Hypothetical
           protein ZK550.2 protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = -3

Query: 452 LFTNFSMSVCCLVALICTMSIGVTRLMSISLSKYTLYSIGVHCTFVLYVY 303
           L+     S+ C+V+++    IG TR+  I      L+ +GV   F +  Y
Sbjct: 300 LYNGIIESITCIVSVLINFGIGKTRIGKIDKRIQILFGLGVFVAFHVVNY 349


>AC024200-11|AAF36000.1|  271|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.6 protein.
          Length = 271

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +2

Query: 245 FHICFHTEASISLSYGYHHHIHTRQMYNVHQLNTKYIYLKILTSIWS 385
           +HI  +T++ I     YH H H  Q+Y++H +NT YI   +  + ++
Sbjct: 47  YHIYTYTKSPI-----YHIH-HIYQIYHIHIINTLYIIFGVFLACYA 87


>Z81487-6|CAB03996.2|  872|Caenorhabditis elegans Hypothetical
           protein C54E10.1 protein.
          Length = 872

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = +3

Query: 207 RL*NKTKRQHLLRSTFVFIPKLVFL 281
           RL NK +RQ LL ST   IP+ VFL
Sbjct: 711 RLRNKQERQSLLESTVNIIPEPVFL 735


>EF495354-1|ABP48104.1|  162|Caenorhabditis elegans LON-8 protein.
          Length = 162

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 214 KIKRNANTS-CVPHLFSYRS*YFFKLWVSPSYTYKTNVQCTPIE 342
           ++ R  NT  C P++F Y     F LW SP    +  + C  I+
Sbjct: 111 RVNRFTNTDQCEPYIFPYCPELDFNLWRSPRTKQECELYCYSID 154


>Z70206-2|CAA94126.2|  771|Caenorhabditis elegans Hypothetical
           protein C49F8.2 protein.
          Length = 771

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 54  GYNINVIIYPVLINLVMLY 110
           G  +  +IYP+L+NL M+Y
Sbjct: 206 GTGVGTVIYPILLNLSMIY 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,768,714
Number of Sequences: 27780
Number of extensions: 312818
Number of successful extensions: 684
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)